View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_32 (Length: 358)
Name: NF18078_low_32
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 69 - 333
Target Start/End: Original strand, 54395056 - 54395314
Alignment:
| Q |
69 |
agccacctcttagcaggtagtatcagatttaagcgatataaattgacagaaattaaattgcattcattttatttcatctctcaattacactgatcacaca |
168 |
Q |
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| T |
54395056 |
agccacctcttaacaggtagtatcagatttaagcgatataaattgacagaaattaaattacattcattttatttcatctctcaattacactgatcacaca |
54395155 |
T |
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| Q |
169 |
aaact-aaaaaagac--atataaaaccttagacactcaagcctacctaccttctgtaact-aaacattaacaggacacaagacaagtttcatacacatac |
264 |
Q |
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| T |
54395156 |
aaactaaaaaaagacatatataaaaccttagacactcaagcctacctaccttctgtaactaaaacattaacaggac----------tttcatacacatac |
54395245 |
T |
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| Q |
265 |
aaccaatgtttcaaaaacttagtcaacctcttcaatcttaggtccaactccagagcctgtcccattaga |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54395246 |
aaccaatgtttcaaaaacttagtcaacctcttcaatcttaggtccagctccagagcctgtcccattaga |
54395314 |
T |
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