View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_33 (Length: 352)

Name: NF18078_low_33
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_33
NF18078_low_33
[»] chr4 (13 HSPs)
chr4 (56-352)||(36369476-36369771)
chr4 (11-132)||(36417528-36417649)
chr4 (11-129)||(36426356-36426474)
chr4 (212-342)||(36434499-36434631)
chr4 (11-132)||(36397940-36398061)
chr4 (11-124)||(36412197-36412310)
chr4 (15-132)||(36388165-36388282)
chr4 (30-128)||(36404894-36404992)
chr4 (261-342)||(36418041-36418122)
chr4 (261-342)||(36428021-36428102)
chr4 (9-170)||(36374203-36374368)
chr4 (261-342)||(36374915-36374996)
chr4 (249-314)||(36388616-36388681)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 56 - 352
Target Start/End: Original strand, 36369476 - 36369771
Alignment:
Q  56 agtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatgtgatatttagggatgacatcccttgtt 155  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369476 agtttctatagtt-caattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatgtgatatttagggatgacatcccttgtt 36369574  T
Q  156 ctttatatttcattannnnnnngcagtctgttatgcaaaatgtgtcctattagtttcaaaatttataatcgaagattttttgagagctaaatggaaattt 255  Q
    | ||||| |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369575 ccttataattcattatttttttgcagtctgttatgcaaaatgtgtcctattagtttcaaaatttataatcgaagattttttgagagctaaatggaaattt 36369674  T
Q  256 aaccttcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaacttcagataaaatgctgcatcaatcaaaccaagatttgtctggaga 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  36369675 aaccttcaaaatgtgtaaattgattaaaatcctacctcattccttctgtaacttcagataaaatgctgcatcaatcaaaccaatattcgtctggaga 36369771  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 36417528 - 36417649
Alignment:
Q  11 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 110  Q
    |||||||||| |||||| ||||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36417528 aagcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36417627  T
Q  111 gaaaaaagaaagggtatgtgat 132  Q
     |||| ||||||||||||||||    
T  36417628 aaaaagagaaagggtatgtgat 36417649  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 36426356 - 36426474
Alignment:
Q  11 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 110  Q
    |||||||||| ||||||| |||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36426356 aagcaaaggagtccttggcaaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36426455  T
Q  111 gaaaaaagaaagggtatgt 129  Q
     |||| |||||||||||||    
T  36426456 aaaaagagaaagggtatgt 36426474  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 36434499 - 36434631
Alignment:
Q  212 caaaatttataatcgaagatt--ttttgagagctaaatggaaatttaaccttcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaactt 309  Q
    |||||| ||||||| ||||||  |||||||||| |||  |||||  | |||||||||||| ||| |||||||||||| |||||||| || ||||||||||    
T  36434499 caaaatgtataatctaagattctttttgagagccaaaaagaaatacacccttcaaaatgtttaagttgattgaaatcttacctcatgccatttgtaactt 36434598  T
Q  310 cagataaaatgctgcatcaatcaaaccaagatt 342  Q
    ||||||||||| |||  |||| |||||||||||    
T  36434599 cagataaaatggtgcggcaattaaaccaagatt 36434631  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 36397940 - 36398061
Alignment:
Q  11 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 110  Q
    |||||||||| |||||| |||||||||||| ||||   || |||||||||| ||||||||||| ||| | ||||| || ||| || ||| ||||||| ||    
T  36397940 aagcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaag 36398039  T
Q  111 gaaaaaagaaagggtatgtgat 132  Q
     |||||||||||||||||||||    
T  36398040 aaaaaaagaaagggtatgtgat 36398061  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 36412197 - 36412310
Alignment:
Q  11 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 110  Q
    |||||||||| |||||| ||||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36412197 aagcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36412296  T
Q  111 gaaaaaagaaaggg 124  Q
     |||| ||||||||    
T  36412297 aaaaagagaaaggg 36412310  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 36388165 - 36388282
Alignment:
Q  15 aaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaa 114  Q
    |||||| | |||| |||||||||||| |||||  |||| |||| ||||||| ||||||||||||||||||| || ||| || | | ||||||| || |||    
T  36388165 aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcctcctcctctcctgtgtgaactacatgtggaagaaaa 36388264  T
Q  115 aaagaaagggtatgtgat 132  Q
    ||||  ||||||||||||    
T  36388265 aaagggagggtatgtgat 36388282  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 36404894 - 36404992
Alignment:
Q  30 aaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatg 128  Q
    ||||||||||| |||||  ||||||||| |||||| |||||||||||| ||||||| || ||| |  ||| ||||||| || |||||| ||||||||||    
T  36404894 aaaaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaagaaaaaaacaaagggtatg 36404992  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 36418041 - 36418122
Alignment:
Q  261 tcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaacttcagataaaatgctgcatcaatcaaaccaagatt 342  Q
    ||||||||| ||| |||||||||||| ||||| ||  | ||||||||||||||||||||| |||  ||| ||||||||||||    
T  36418041 tcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccgcaaccaaaccaagatt 36418122  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 36428021 - 36428102
Alignment:
Q  261 tcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaacttcagataaaatgctgcatcaatcaaaccaagatt 342  Q
    ||||||||| ||| |||||||||||| ||||| ||  | ||||||||||||||||||||| |||  ||| ||||||||||||    
T  36428021 tcaaaatgtttaagttgattgaaatcttaccttatgtcatttgtaacttcagataaaatgatgccgcaaccaaaccaagatt 36428102  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 36374203 - 36374368
Alignment:
Q  9 agaagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtggg 108  Q
    |||||||||||| |||| ||| |||||||| |  ||||  ||||||| | ||||| |||||| |||||||||||||| || | | ||| ||||| ||||     
T  36374203 agaagcaaaggagtcctaggtcaaaagaggatttctgcaattctggttgcttctacagttgcgattgtcctcctcctctcctttgtgttttgcaggtgga 36374302  T
Q  109 aggaaaaaagaaagggtatgtgat----atttagggatgacatcccttgttctttatatttcatta 170  Q
    || ||| |||||| ||||||||||     |||| |||| | ||||  |||||||||||||||||||    
T  36374303 agaaaacaagaaacggtatgtgattcaattttaaggataatatcctctgttctttatatttcatta 36374368  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 36374915 - 36374996
Alignment:
Q  261 tcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaacttcagataaaatgctgcatcaatcaaaccaagatt 342  Q
    ||||||| || || |||||||||||| |||||| | || ||||||||||||||||||||| |||  ||||  ||||||||||    
T  36374915 tcaaaatttgcaagttgattgaaatcttacctcgtgccatttgtaacttcagataaaatgatgcggcaatttaaccaagatt 36374996  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 36388616 - 36388681
Alignment:
Q  249 gaaatttaaccttcaaaatgtgtaaattgattgaaatcctacctcattccttttgtaacttcagat 314  Q
    ||||| || |||| ||||||||| | |||||||||||| |||||||| || |||||||||||||||    
T  36388616 gaaatataccctttaaaatgtgttagttgattgaaatcttacctcatgccatttgtaacttcagat 36388681  T

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