View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_34 (Length: 352)

Name: NF18078_low_34
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_34
NF18078_low_34
[»] chr1 (4 HSPs)
chr1 (176-269)||(50590242-50590335)
chr1 (69-171)||(50589807-50589909)
chr1 (307-352)||(50590373-50590418)
chr1 (77-171)||(19598093-19598188)
[»] chr2 (4 HSPs)
chr2 (176-269)||(16959021-16959114)
chr2 (100-147)||(16959470-16959517)
chr2 (72-146)||(22885894-22885968)
chr2 (73-127)||(27739348-27739402)
[»] chr4 (5 HSPs)
chr4 (77-123)||(28966393-28966439)
chr4 (71-146)||(12295595-12295670)
chr4 (69-138)||(46699334-46699403)
chr4 (69-113)||(8254531-8254575)
chr4 (69-113)||(8267949-8267993)
[»] chr5 (1 HSPs)
chr5 (69-123)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 50590242 - 50590335
Alignment:
Q  176 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 269  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50590242 cgactcaagatcacgcagatgaaacaaaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 50590335  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 50589807 - 50589909
Alignment:
Q  69 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaaaaaatcacagcggatatactca 168  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  50589807 tcagcaagcacaagagcaagacaacaaggttgatagtcttcaaggaaagcagcaacatcactatagcatttcgaagaaaaaatcacagtggatatactca 50589906  T
Q  169 caa 171  Q
    |||    
T  50589907 caa 50589909  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 50590373 - 50590418
Alignment:
Q  307 tcaagaacagcacgaacacaatcacgaactacacaacaacatgaac 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50590373 tcaagaacagcacgaacacaatcacgaactacacaacaacatgaac 50590418  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 19598188 - 19598093
Alignment:
Q  77 cacaagagcaagacaacgaggttgatagtcttcaaggaaagtagc-aacatcactatagcattttgaagaaaaaatcacagcggatatactcacaa 171  Q
    ||||||||||||||||||||||| |  |||| ||||||||| ||| |||||||| |||||||| |||||||  || ||||  | ||||||||||||    
T  19598188 cacaagagcaagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaa 19598093  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 16959114 - 16959021
Alignment:
Q  176 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 269  Q
    ||||||||||||| |||||||||||  ||| |||||||| || | ||||||||||  ||||||||  || ||||||||||||||||| ||||||    
T  16959114 cgactcaagatcatgcagatgaaacgtaaatttttaaggaacaataacaatattgtctccaagttttacgagacacacaaacaaccaatttatt 16959021  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 16959517 - 16959470
Alignment:
Q  100 gatagtcttcaaggaaagtagcaacatcactatagcattttgaagaaa 147  Q
    |||||||||||||||||| | ||||||| | |||||||||||||||||    
T  16959517 gatagtcttcaaggaaagcaacaacatccccatagcattttgaagaaa 16959470  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 22885894 - 22885968
Alignment:
Q  72 gcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 146  Q
    |||||||||||||||||||||| || |||| |||||  |||||||| || |||||| |  |||||||| ||||||    
T  22885894 gcaagcacaagagcaagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaa 22885968  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 27739402 - 27739348
Alignment:
Q  73 caagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatc 127  Q
    ||||||||||||||||||||| ||| | | ||||| ||||||||| |||||||||    
T  27739402 caagcacaagagcaagacaacaaggcttaaagtctccaaggaaagcagcaacatc 27739348  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 28966439 - 28966393
Alignment:
Q  77 cacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 123  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  28966439 cacaagagcaagacaacgaggttgaaagtctccaaggaaagtagcaa 28966393  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 12295670 - 12295595
Alignment:
Q  71 agcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 146  Q
    ||||||||||||||||||||| ||||| | | ||||| |||| |||| || |||||||| |||||||| |||||||    
T  12295670 agcaagcacaagagcaagacagcgaggctaaaagtctccaagaaaagcagtaacatcaccatagcattctgaagaa 12295595  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 46699334 - 46699403
Alignment:
Q  69 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcatt 138  Q
    ||||||||||||||||||||| | ||||| ||| |||||  |||||||| ||||||||||| ||| ||||    
T  46699334 tcagcaagcacaagagcaagatagcgaggctgaaagtctcgaaggaaagcagcaacatcaccataacatt 46699403  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 8254575 - 8254531
Alignment:
Q  69 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 113  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||    
T  8254575 tcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8254531  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 8267993 - 8267949
Alignment:
Q  69 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 113  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||    
T  8267993 tcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8267949  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 27712658 - 27712604
Alignment:
Q  69 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 123  Q
    |||||| |||||||||||| ||||||||||||| |||||  |||||||| |||||    
T  27712658 tcagcaggcacaagagcaatacaacgaggttgaaagtctctaaggaaagaagcaa 27712604  T

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