View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_36 (Length: 339)
Name: NF18078_low_36
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_36 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 36770918 - 36771238
Alignment:
| Q |
19 |
agtttgctatttattgcaactgcaattcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttc |
118 |
Q |
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| T |
36770918 |
agtttgctatttattgcaactgcaattcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttc |
36771017 |
T |
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| Q |
119 |
atgcagtgttatgggctggtagttatgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatga |
218 |
Q |
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| T |
36771018 |
atgcagtgttatgggctggtagttatgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatga |
36771117 |
T |
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| Q |
219 |
tagtgaacctcataacgtcgatgttgtttgatttatgagaagtccttgtgttgcaactatttaataaaattaaaacaaaattaagatgtttgatttaaat |
318 |
Q |
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| T |
36771118 |
tagtgaacctcataacgtcgatgttgtttgatttatgagaagtccttgtgttgcaactatttaataaaataaaataaaaattaagaagtttgatttaaat |
36771217 |
T |
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| Q |
319 |
gtcaatagaataagttctttt |
339 |
Q |
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| T |
36771218 |
gcaaatagaacaagttctttt |
36771238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 36773174 - 36773358
Alignment:
| Q |
31 |
attgcaactgcaattcagctgattttgaccgaagcaggtattcattttgcagtgactttgacttgtagtgtacctgtagttttgcttcatgcagtgttat |
130 |
Q |
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| T |
36773174 |
attgcaactgcaattcagctgattatgactgatgccggtactcattttgcaattacttcgacttgtagtgtgccggtagttttgcttcatgcagttttat |
36773273 |
T |
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| Q |
131 |
gggctggtagttatgaatatgatgcgtatgaaactgaggaaggttctggtaaagaagaattggctcctcttaccggcagccagaatgatag |
221 |
Q |
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| T |
36773274 |
gggatagtagt------tatgatggttatgagactaaggaaggttctggtacacaagaattggctcctcttaccagcagccaaaatgatag |
36773358 |
T |
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