View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_38 (Length: 328)
Name: NF18078_low_38
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 26455941 - 26456214
Alignment:
| Q |
41 |
gaccaatcttacataatataattatagtaaaagttctaagtaattatgtattaattaatataacacgacaaacataagtgataagtgagtgcacgtaacc |
140 |
Q |
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| T |
26455941 |
gaccaatcttacataatataattatagtaaaagttctaagtaattatgtattaattaatataacacgacaaacataagtgataagtgagtgcacgtaacc |
26456040 |
T |
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| Q |
141 |
ttcgattctatattggacacatattcagctaacaaatgtatcattttaaactttgttggaatgaaaatcaaagacatttgtttttattatgtcctaaaac |
240 |
Q |
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| T |
26456041 |
ttcgattctatattggacacatattcagctaacaaatgtatcattttaaactttgttggaatgaaaatcaaagacatttgtttttattatgtcctaaaac |
26456140 |
T |
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| Q |
241 |
caaaattccctta-nnnnnnngaaaaacctattgtttttggaattatttaagataataacgtcgcgaaagagat |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
26456141 |
caaaattcccttattttttttgaaaaacctattgtttttggaattttttaagataaaaacgtcgcgaaagagat |
26456214 |
T |
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