View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18078_low_4 (Length: 607)
Name: NF18078_low_4
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 88 - 345
Target Start/End: Original strand, 42173906 - 42174158
Alignment:
| Q |
88 |
tggaggacacaaacatgccttnnnnnnnntgttatttttatgtttcggtttctattgatgatgataatcttcatccactaaacttaaatttctgccattt |
187 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42173906 |
tggaggacacaaacatgacttaaaaaaaatgttatttttctgtttcggtttctattgatgatgataatcttcatccactaaacttaaatttctgccattt |
42174005 |
T |
|
| Q |
188 |
tttgcaagtttctctttatttcaaatttcaactatcataactcgctgctttcattgaagaatacccnnnnnnngccacagactattaacttttgtctgaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
42174006 |
tttgcaagtttctctttatttcaaatttcaactatcataactcgctgctttcattgaagaatacccaaaaaaagc--cagactattaacttctgtctgaa |
42174103 |
T |
|
| Q |
288 |
caatgtaannnnnnnnncttttcgcatagcaatacagcccacagggtatttgttatta |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42174104 |
caatgtaattttttt---ttttcgcatagcaatacagcctacagggtatttgttatta |
42174158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 42173806 - 42173875
Alignment:
| Q |
20 |
ctccgcatatactccaaaaccatttccaatggctgaagagagtacgtaatgttttggctcttcaaaaatggag |
92 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42173806 |
ctccgcatatactccaaaaccgtttccaatggctgaagagagtacgtaa---tttggctcttcaaaaatggag |
42173875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 11354225 - 11354170
Alignment:
| Q |
135 |
gtttctattgatgatgataatcttcatccactaaacttaaatttctgccatttttt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
11354225 |
gtttctattgatgatgataatcttcatccactaaacctatatttctgccatttttt |
11354170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 29057947 - 29058000
Alignment:
| Q |
137 |
ttctattgatgatgataatcttcatccactaaac--ttaaatttctgccatttt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
29057947 |
ttctattgatgatgataatcttcatccaccaaacctatatatttctgccatttt |
29058000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 370
Target Start/End: Original strand, 38174059 - 38174089
Alignment:
| Q |
340 |
ttattagggttaatatgtctttacctcctgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38174059 |
ttattagggttaatatgtctttacctcctgt |
38174089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 368
Target Start/End: Complemental strand, 3777439 - 3777411
Alignment:
| Q |
340 |
ttattagggttaatatgtctttacctcct |
368 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3777439 |
ttattagggttaatatgtctttacctcct |
3777411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University