View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18078_low_41 (Length: 311)
Name: NF18078_low_41
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_41 |
 | |
|
| [»] scaffold0454 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 22965167 - 22965449
Alignment:
| Q |
14 |
ctcattaaattcacataagatgacaact-agggttaatttataaatactactaccataaacaccacattcaattctctacaaatttaagcacgatgtaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22965167 |
ctcattaaattcacataagatgacaacttagggttaatttacaaatactactaccataaacaccacattcaattctctacaaatttaagcacgatttaga |
22965266 |
T |
|
| Q |
113 |
atttttcacaaacaattaatgttgaaattcaaataataaaaaaggaacatcagatgcaaaaccaatccacaaatcaacaactagaagttcatatctaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22965267 |
gtttttcacaaacaattaatgttgaaattcaaataataaaaaaggcacatcagatgcaaaaccaatccacaaatcaacaactagaagttcatatccaatt |
22965366 |
T |
|
| Q |
213 |
ctggaattattgattataacaaagcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22965367 |
ctggaattgttgattataacaaagcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
22965449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 22977459 - 22977641
Alignment:
| Q |
19 |
taaattcacataagatgacaactagggttaatttataaatactactaccataaacaccacattcaattctctacaaatttaagcacgatgtagaattttt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22977459 |
taaattcacatatgatgacaactagggttaatatacaagtactactaccataaataccacattcagttctctacaaatttaagcacgatgtagaattttt |
22977558 |
T |
|
| Q |
119 |
cacaaacaattaatgttgaaattcaaataataaaaaaggaacatcagatgcaaaaccaatccacaaatcaacaactagaagtt |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22977559 |
cacaaacaattgatgttgaaattcaaataataaaaaaggcacatcagatgcaaaaccaatccacaaatcaacaactagaagtt |
22977641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 22977767 - 22977827
Alignment:
| Q |
235 |
agcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
295 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
22977767 |
agcttaaaatgaactagcagtaacattatttaccactccttggtttgaagagtctccaata |
22977827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 21885461 - 21885179
Alignment:
| Q |
14 |
ctcattaaattcacataagatgacaact-agggttaatttataaatactactaccataaacaccacattcaattctctacaaatttaagcacgatgtaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21885461 |
ctcattaaattcacataagatgacaacttagggttaatttacaaatactactaccataaacaccacattcaattctctacaaatttaagcacgatttaga |
21885362 |
T |
|
| Q |
113 |
atttttcacaaacaattaatgttgaaattcaaataataaaaaaggaacatcagatgcaaaaccaatccacaaatcaacaactagaagttcatatctaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21885361 |
gtttttcacaaacaattaatgttgaaattcaaataataaaaaaggcacatcagatgcaaaaccaatccacaaatcaacaactagaagttcatatccaatt |
21885262 |
T |
|
| Q |
213 |
ctggaattattgattataacaaagcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21885261 |
ctggaattgttgattataacaaagcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
21885179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 12394 - 12212
Alignment:
| Q |
19 |
taaattcacataagatgacaactagggttaatttataaatactactaccataaacaccacattcaattctctacaaatttaagcacgatgtagaattttt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12394 |
taaattcacatatgatgacaactagggttaatatacaagtactactaccataaataccacattcagttctctacaaatttaagcacgatgtagaattttt |
12295 |
T |
|
| Q |
119 |
cacaaacaattaatgttgaaattcaaataataaaaaaggaacatcagatgcaaaaccaatccacaaatcaacaactagaagtt |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12294 |
cacaaacaattgatgttgaaattcaaataataaaaaaggcacatcagatgcaaaaccaatccacaaatcaacaactagaagtt |
12212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 12086 - 12026
Alignment:
| Q |
235 |
agcttaaaatgaactagcaggaacattatctaccactcctttgtttgaagagtctccaata |
295 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
12086 |
agcttaaaatgaactagcagtaacattatttaccactccttggtttgaagagtctccaata |
12026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University