View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_45 (Length: 301)
Name: NF18078_low_45
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 40076226 - 40075935
Alignment:
| Q |
1 |
gactaaaatggcttaaaacggccaattgcttatatctagtaacttgtaacttaaatgtaagtacaaaacaagtactttaattagagtgcacgaggatgaa |
100 |
Q |
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| T |
40076226 |
gactaaaatggcttaaaacggccaattgcttatatctagtaacttgtaacttaaatgtaagtacaaaacaagtactttaattagagtgcacgaggatgaa |
40076127 |
T |
|
| Q |
101 |
acgcatatttctcgtcttaacacaatcagttaagcggtgatggttgtccggattatatttgtcgtcaacttcgagaacacttgttttctaaactaattgc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
40076126 |
acgcatatttctcgtcttaacacaaccagttaagcggtgatggttgtctggattatatttgtcgtcaacttcaagaactattgttttctaaactaattgc |
40076027 |
T |
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| Q |
201 |
aatactttcaacaacacaaaagttgagta----------tggtgagtatatccgtttaaggaacaatttattttgtgtgcactatacatact |
282 |
Q |
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|||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40076026 |
aatacttttaacgacacaaaagttgagtatgatgttaattgttgagtatatccgtttaaggaacaatttattttgtgtgcactatacatact |
40075935 |
T |
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