View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_47 (Length: 286)

Name: NF18078_low_47
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_47
NF18078_low_47
[»] chr3 (3 HSPs)
chr3 (11-163)||(6079191-6079342)
chr3 (12-89)||(11028675-11028752)
chr3 (228-264)||(6079090-6079126)
[»] chr6 (3 HSPs)
chr6 (11-98)||(19215364-19215449)
chr6 (230-266)||(13549165-13549201)
chr6 (11-68)||(13548906-13548963)
[»] scaffold0017 (2 HSPs)
scaffold0017 (11-93)||(39145-39228)
scaffold0017 (124-163)||(39286-39325)
[»] chr1 (1 HSPs)
chr1 (11-71)||(19190469-19190529)
[»] chr2 (1 HSPs)
chr2 (11-93)||(13652916-13652999)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 6079342 - 6079191
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnnnnnnnnnncc 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||          ||    
T  6079342 atacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag-aaaaaaaaacc 6079244  T
Q  111 aaattattttctttgttcatcatctctatttacatcagactttcattttctac 163  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079243 aaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  12 tacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 89  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 6079126 - 6079090
Alignment:
Q  228 tgtaaacaaacctctctctctccaaaaaccttatgcc 264  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcc 6079090  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 19215364 - 19215449
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 98  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215364 atacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 13549165 - 13549201
Alignment:
Q  230 taaacaaacctctctctctccaaaaaccttatgcccc 266  Q
    |||||||||||||||||||||||||||||||||||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgcccc 13549201  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 13548906 - 13548963
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaa 68  Q
    |||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548906 atacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

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Target: scaffold0017 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 39145 - 39228
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 93  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39145 atacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  124 tgttcatcatctctatttacatcagactttcattttctac 163  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 19190529 - 19190469
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 71  Q
    ||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190529 atacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 13652916 - 13652999
Alignment:
Q  11 atacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 93  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652916 atacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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