View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_5 (Length: 565)

Name: NF18078_low_5
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_5
NF18078_low_5
[»] chr2 (6 HSPs)
chr2 (16-548)||(3882087-3882619)
chr2 (507-547)||(18684322-18684362)
chr2 (511-548)||(32859751-32859788)
chr2 (512-548)||(8773776-8773812)
chr2 (512-548)||(15816807-15816843)
chr2 (512-548)||(43745591-43745627)
[»] chr6 (4 HSPs)
chr6 (16-200)||(18987229-18987412)
chr6 (236-282)||(18987154-18987200)
chr6 (19-83)||(12287090-12287154)
chr6 (512-548)||(35229259-35229295)
[»] chr5 (10 HSPs)
chr5 (16-200)||(23918111-23918294)
chr5 (236-285)||(23918323-23918372)
chr5 (504-548)||(25437978-25438022)
chr5 (512-548)||(23023600-23023636)
chr5 (513-548)||(10410418-10410453)
chr5 (513-548)||(31672379-31672414)
chr5 (507-548)||(34032193-34032234)
chr5 (509-537)||(2112509-2112537)
chr5 (512-548)||(30104771-30104807)
chr5 (512-548)||(41583510-41583546)
[»] chr8 (8 HSPs)
chr8 (19-200)||(30342356-30342536)
chr8 (312-479)||(32443584-32443749)
chr8 (236-282)||(30342565-30342611)
chr8 (511-548)||(7262125-7262162)
chr8 (516-548)||(1876585-1876617)
chr8 (512-548)||(18808869-18808905)
chr8 (512-548)||(20279658-20279694)
chr8 (512-548)||(21066285-21066321)
[»] scaffold0131 (1 HSPs)
scaffold0131 (121-199)||(14069-14147)
[»] chr1 (13 HSPs)
chr1 (510-548)||(35259149-35259187)
chr1 (508-548)||(18114537-18114577)
chr1 (513-548)||(39150550-39150585)
chr1 (513-548)||(40570657-40570692)
chr1 (510-548)||(3506945-3506983)
chr1 (510-548)||(34861315-34861353)
chr1 (504-548)||(2864102-2864146)
chr1 (512-548)||(3047834-3047870)
chr1 (512-548)||(7549810-7549846)
chr1 (512-548)||(16113886-16113922)
chr1 (512-548)||(39912313-39912349)
chr1 (512-548)||(43492232-43492268)
chr1 (512-548)||(45584506-45584542)
[»] chr4 (6 HSPs)
chr4 (507-548)||(8297833-8297874)
chr4 (513-548)||(49446697-49446732)
chr4 (513-548)||(49795113-49795148)
chr4 (507-548)||(6316909-6316950)
chr4 (508-548)||(31072573-31072613)
chr4 (512-548)||(51291053-51291089)
[»] chr7 (5 HSPs)
chr7 (508-548)||(17157873-17157913)
chr7 (513-548)||(27123242-27123277)
chr7 (519-548)||(14651360-14651389)
chr7 (512-548)||(27766789-27766825)
chr7 (512-548)||(34299846-34299882)
[»] chr3 (6 HSPs)
chr3 (508-548)||(17517516-17517556)
chr3 (511-548)||(29611986-29612023)
chr3 (515-548)||(52308986-52309019)
chr3 (516-548)||(24313522-24313554)
chr3 (512-548)||(34758896-34758932)
chr3 (512-548)||(45529222-45529258)
[»] scaffold0182 (1 HSPs)
scaffold0182 (512-548)||(19657-19693)


Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 3882087 - 3882619
Alignment:
Q  16 aatacaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttacctgtctattgaaaatgctgatgctgatcttag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3882087 aatacaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttacctgtctattgaaaatgctgatgctgatcttag 3882186  T
Q  116 aactttgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatgctattgctaagagttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3882187 aactttgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatgctattgctaagagttc 3882286  T
Q  216 tatgcatgcattctgtacagtgtgcttcaaactagttggttggaatttcatattgatttttagagatactagatatgagcccatgtcaattttttctttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3882287 tatgcatgcattctgtacagtgtgcttcaaactagttggttggaatttcatattgatttttagagatactagatatgagcccatgtcaattttttctttt 3882386  T
Q  316 agcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagttccagatgaattgaggtagttagattggcaaaagcctttttgcaggttga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3882387 agcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagttccagatgaattgaggtagttagattggcaaaaacctttttgcaggttga 3882486  T
Q  416 aatcaactatcacagtttgtaagtatattgatatcatgatacaggtttttgtatgacataccataaacctggtagtagcatatacaaattctttttaggg 515  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3882487 aatcaactatcacagtttgttagtatattgatatcatgatacaggtttttgtatgacataccataaacctggtagtagcatatacaaattctttttaggg 3882586  T
Q  516 tcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||||||||||||    
T  3882587 tcttgttaacgagtgccctcggggcactcttta 3882619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 18684322 - 18684362
Alignment:
Q  507 tttttagggtcttgttaacgagtgccctcggggcactcttt 547  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  18684322 tttttagggtcttgttaacgagtgctctcgggacactcttt 18684362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 32859751 - 32859788
Alignment:
Q  511 tagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  32859751 tagggtcttgttaacgagtgcccccagggcactcttta 32859788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 8773812 - 8773776
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||| | ||||||||||||||||    
T  8773812 agggtcttgttaacgagtactctcggggcactcttta 8773776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 15816843 - 15816807
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| | ||||||||||||    
T  15816843 agggtcttgttaacgagtgcccccagggcactcttta 15816807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 43745591 - 43745627
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||  ||||||||||||    
T  43745591 agggtcttgttaacgagtgcccttagggcactcttta 43745627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 8e-81; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 18987412 - 18987229
Alignment:
Q  16 aatacaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttacctgtctattgaaaatgctgatgctgatcttag 115  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18987412 aatacaaactataggaatgtgtggatgcagcagatggaaaaccaacagatgaaaatgtggatt-ttacctgtctattgaaaatgctgatgctgatcttag 18987314  T
Q  116 aactttgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatgc 200  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18987313 aactttgcctttcagcaatctgaaactaatttcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggatgtatgc 18987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 18987200 - 18987154
Alignment:
Q  236 tgtgcttcaaactagttggttggaatttcatattgatttttagagat 282  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  18987200 tgtgcttctaactaattggttggaatttcatattgatttttagagat 18987154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 12287154 - 12287090
Alignment:
Q  19 acaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttac 83  Q
    |||||||| |||||||||||||| | ||| || |||||||| || ||||||||||||||||||||    
T  12287154 acaaactacaggactgtgtggatactgcaaattgaaaaccaacaaatgaaaatgtggattcttac 12287090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 35229259 - 35229295
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| |||| |||||||||    
T  35229259 agggtcttgttaacgagtgcccccgggacactcttta 35229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 8e-81; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 23918111 - 23918294
Alignment:
Q  16 aatacaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttacctgtctattgaaaatgctgatgctgatcttag 115  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  23918111 aatacaaactataggaatgtgtggatgcagcagatggaaaaccaacagatgaaaatgtggact-ttacctgtctattgaaaatgctgatgctgatcttag 23918209  T
Q  116 aactttgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatgc 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23918210 aactttgcctttcagcaatctgaaacgaatttcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggatgtatgc 23918294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 23918323 - 23918372
Alignment:
Q  236 tgtgcttcaaactagttggttggaatttcatattgatttttagagatact 285  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  23918323 tgtgcttctaactaattggttggaatttcatattgatttttagagatact 23918372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 548
Target Start/End: Complemental strand, 25438022 - 25437978
Alignment:
Q  504 ttctttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  25438022 ttctttttagggtcttgttaacgagtgcccccgggacactcttta 25437978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 23023600 - 23023636
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23023600 agggtcttgttaacgagtgcccccggggcactcttta 23023636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 10410418 - 10410453
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10410418 gggtcttgttaacgagtgcccccggggcactcttta 10410453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 31672379 - 31672414
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31672379 gggtcttgttaacgagtgcccccggggcactcttta 31672414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 34032234 - 34032193
Alignment:
Q  507 tttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||| ||||||||||||||||||| ||| |||||||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactcttta 34032193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 537
Target Start/End: Original strand, 2112509 - 2112537
Alignment:
Q  509 tttagggtcttgttaacgagtgccctcgg 537  Q
    |||||||||||||||||||||||||||||    
T  2112509 tttagggtcttgttaacgagtgccctcgg 2112537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 30104771 - 30104807
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  30104771 agggtattgttaacaagtgccctcggggcactcttta 30104807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 41583510 - 41583546
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| |||| |||||||||    
T  41583510 agggtcttgttaacgagtgcccccgggtcactcttta 41583546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 30342356 - 30342536
Alignment:
Q  19 acaaactataggactgtgtggatccagcagatggaaaaccagcagatgaaaatgtggattcttacctgtctattgaaaatgctgatgctgatcttagaac 118  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30342356 acaaactataggaatgtgtggatgcagcagatggaaaaccaacagatgaaaatgtggatt-ttacctgtctattgaaaatgctgatgctgatcttagaac 30342454  T
Q  119 tttgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatgc 200  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  30342455 tttgcctttcagcaatctgaaacaaatttcaggaacaaagagtagaaatcaaaatataggtaaaatattcatggatgtatgc 30342536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 312 - 479
Target Start/End: Complemental strand, 32443749 - 32443584
Alignment:
Q  312 ttttagcatagtatcgttttaaaatcctctggtagtaaaatcttgtggcgtagttccagatgaattgaggtagttagattggcaaaagcctttttgcagg 411  Q
    ||||||||||||||||||||||| |||||||||||| || | |||||| ||||||| |||||| || | ||||| | | |||||||| ||||||||||||    
T  32443749 ttttagcatagtatcgttttaaa-tcctctggtagttaagt-ttgtggtgtagttctagatgagttaatgtagtcaaagtggcaaaaacctttttgcagg 32443652  T
Q  412 ttgaaatcaactatcacagtttgtaagtatattgatatcatgatacaggtttttgtatgacataccat 479  Q
    |||||||| ||||||| ||||||| ||||||||||||||||  |||||||||||||||||||| ||||    
T  32443651 ttgaaatcgactatcatagtttgttagtatattgatatcatagtacaggtttttgtatgacatgccat 32443584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 30342565 - 30342611
Alignment:
Q  236 tgtgcttcaaactagttggttggaatttcatattgatttttagagat 282  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  30342565 tgtgcttctaactaattggttggaatttcatattgatttttagagat 30342611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Complemental strand, 7262162 - 7262125
Alignment:
Q  511 tagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  7262162 tagggtcttgttaacgagtgcccccagggcactcttta 7262125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 548
Target Start/End: Complemental strand, 1876617 - 1876585
Alignment:
Q  516 tcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||| ||||||||||||||    
T  1876617 tcttgttaacgagtgcccccggggcactcttta 1876585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 18808905 - 18808869
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||| | ||||||||||||||    
T  18808905 agggtcttgttaacgagtgctcccggggcactcttta 18808869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 20279694 - 20279658
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20279694 agggtcttgttaacaagtgcccccggggcactcttta 20279658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 21066321 - 21066285
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  21066321 agggtcttgttaacaagtgcccccggggcactcttta 21066285  T

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Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 14069 - 14147
Alignment:
Q  121 tgcctttcagcaatctgaaacgaaattcaggaacaaagagtagaaatcagaataaaggtaaaatattcatggacgtatg 199  Q
    ||||||| ||||||||||||| || |||| ||||||| | ||||||| | |||| |||||||||||||||||| |||||    
T  14069 tgccttttagcaatctgaaacaaatttcatgaacaaacaatagaaataaaaatagaggtaaaatattcatggatgtatg 14147  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 35259187 - 35259149
Alignment:
Q  510 ttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  35259187 ttaggatcttgttaacgagtgccctcggggcactcttta 35259149  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 18114577 - 18114537
Alignment:
Q  508 ttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  18114577 ttttaaggtcttgttaacgagtgcccgcggggcactcttta 18114537  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 39150550 - 39150585
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39150550 gggtcttgttaacgagtgcccccggggcactcttta 39150585  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 40570657 - 40570692
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40570657 gggtcttgttaacgagtgcccccggggcactcttta 40570692  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Original strand, 3506945 - 3506983
Alignment:
Q  510 ttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  3506945 ttagggtctcgttaacgagtgcccgcggggcactcttta 3506983  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 34861353 - 34861315
Alignment:
Q  510 ttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  34861353 ttagggtcttgttaacgagtgccccgggggcactcttta 34861315  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 2864102 - 2864146
Alignment:
Q  504 ttctttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||| ||||||||||||||||||| || |||| |||||||||    
T  2864102 ttcttttaagggtcttgttaacgagtgtccccgggacactcttta 2864146  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 3047834 - 3047870
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  3047834 agggtcttgttaaagagtgcccccggggcactcttta 3047870  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 7549810 - 7549846
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  7549810 agggtcttgttaacgagtgtcctcgggacactcttta 7549846  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 16113886 - 16113922
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||  ||||||||||||||    
T  16113886 agggtcttgttaacgagtgcctccggggcactcttta 16113922  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 39912349 - 39912313
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| |||| |||||||||    
T  39912349 agggtcttgttaacgagtgcccccgggacactcttta 39912313  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 43492268 - 43492232
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||  ||||||||||||    
T  43492268 agggtcttgttaacgagtgccctaagggcactcttta 43492232  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 45584506 - 45584542
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  45584506 agggtcttgttaacgaatgcccccggggcactcttta 45584542  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 8297833 - 8297874
Alignment:
Q  507 tttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  8297833 ttttaagggtcttgttaacgagtgcccccggggcactcttta 8297874  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Complemental strand, 49446732 - 49446697
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49446732 gggtcttgttaacaagtgccctcggggcactcttta 49446697  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 49795113 - 49795148
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| |||||||||||||    
T  49795113 gggtcttgttaacgagtgccctgggggcactcttta 49795148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 6316950 - 6316909
Alignment:
Q  507 tttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||| |||||||||||||||||||||  ||||||||||||||    
T  6316950 ttttaagggtcttgttaacgagtgcctccggggcactcttta 6316909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 31072613 - 31072573
Alignment:
Q  508 ttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||| ||||||||||||||||||||| |||| |||||||||    
T  31072613 ttttcgggtcttgttaacgagtgcccccgggccactcttta 31072573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 51291053 - 51291089
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||| |||||||| |||||||||||    
T  51291053 agggtcttgttaacgaatgccctcgaggcactcttta 51291089  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 17157913 - 17157873
Alignment:
Q  508 ttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  17157913 tttttgggtcttgttaacgagtgcccttggggcactcttta 17157873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 548
Target Start/End: Original strand, 27123242 - 27123277
Alignment:
Q  513 gggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27123242 gggtcttgttaacgagtgcccccggggcactcttta 27123277  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 548
Target Start/End: Original strand, 14651360 - 14651389
Alignment:
Q  519 tgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||||||||||||    
T  14651360 tgttaacgagtgccctcggggcactcttta 14651389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 27766825 - 27766789
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| | ||||||||||||    
T  27766825 agggtcttgttaacgagtgcccccagggcactcttta 27766789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 34299882 - 34299846
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  34299882 agggtcttgttaacgagtgcccccggggcacttttta 34299846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 548
Target Start/End: Original strand, 17517516 - 17517556
Alignment:
Q  508 ttttagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  17517516 ttttagggtcttgttaacgagtgctcccggggcactcttta 17517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 29611986 - 29612023
Alignment:
Q  511 tagggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  29611986 tagggtcttgttaacgagtgcccccgggacactcttta 29612023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 548
Target Start/End: Original strand, 52308986 - 52309019
Alignment:
Q  515 gtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||||||| ||||||||||||||    
T  52308986 gtcttgttaacgagtgcccccggggcactcttta 52309019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 548
Target Start/End: Original strand, 24313522 - 24313554
Alignment:
Q  516 tcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||||||||||||| |||||||||||||||||    
T  24313522 tcttgttaacgagtgtcctcggggcactcttta 24313554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 34758896 - 34758932
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||  ||||||||||||||    
T  34758896 agggtcttgttaacgagtgcctccggggcactcttta 34758932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 45529258 - 45529222
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    ||||| || ||||||||||||||||||||||||||||    
T  45529258 agggtattcttaacgagtgccctcggggcactcttta 45529222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 19657 - 19693
Alignment:
Q  512 agggtcttgttaacgagtgccctcggggcactcttta 548  Q
    |||||||||||||||||||||||  ||||||||||||    
T  19657 agggtcttgttaacgagtgcccttagggcactcttta 19693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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