View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_50 (Length: 278)
Name: NF18078_low_50
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 11762926 - 11763167
Alignment:
| Q |
17 |
aaatacaaaccttttcacccttaagattggcacaagccttaagttgatttcgcatactcggagttaaccttgaaatgtgctctattttcactcgttttct |
116 |
Q |
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| T |
11762926 |
aaatacaaaccttttcacccttaagattggcacaagccttaagttgatttcgcatactcggagttaaccttgaaatgtgctctattttcactcgtttcct |
11763025 |
T |
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| Q |
117 |
tttcttctcattgccttctgtagccgaagaactgttatgttagcaaaaataacatctaattagccttcacgaaagtataaacgttaataacaaaatgaaa |
216 |
Q |
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| T |
11763026 |
tttcttctcattgccttctgtagccgaagaac-----tgttagcaaaaataacatctaattagccttcacaaaagtataaacgttaacaacaaaatgaaa |
11763120 |
T |
|
| Q |
217 |
acaaacattgtctagggacaaaagtatttcataaaccatttccacat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11763121 |
acaaacattgtctagggacaaaagtatttcataaaccattcccacat |
11763167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 11785106 - 11784967
Alignment:
| Q |
17 |
aaatacaaaccttttcacccttaagattggcacaagccttaagttgatttcgcatactcggagttaaccttgaaatgt---gctctattttcactcgttt |
113 |
Q |
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||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
11785106 |
aaatacatacctgttcacccttaagactggcacaagcctcaagttgatttcgcatactcggagttaaccttgaaatgtctgactctgttttcactcgttt |
11785007 |
T |
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| Q |
114 |
tcttttcttctcattgccttctgtagccgaagaactgtta |
153 |
Q |
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| T |
11785006 |
ccttttctgctcagtgccttctgtaacagaagaactgtta |
11784967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 28720228 - 28720121
Alignment:
| Q |
17 |
aaatacaaaccttttcacccttaagattggcacaagccttaagttgatttcgcatactcggagttaaccttgaaatgt---gctctattttcactcgttt |
113 |
Q |
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||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28720228 |
aaatacatgcctgttcacccttaagactggcacaagcctcaagttgatttcgcatactcggagttaaccttgaaatgtctgactctgttttcactcgttt |
28720129 |
T |
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| Q |
114 |
tcttttct |
121 |
Q |
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||||||| |
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| T |
28720128 |
ccttttct |
28720121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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