View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_52 (Length: 265)
Name: NF18078_low_52
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 22505077 - 22505213
Alignment:
| Q |
127 |
cataaattaatcaccagaaatatcctaaagaacatgtagttcaccatgcatgcaataatgtttttattgatattattataagaaaaatgttaaatggcac |
226 |
Q |
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| T |
22505077 |
cataaattaatcaccagaaacatcctaaagaacatgtggttcaccatgcatgcaataatgtttttattgatattattataagaaaaatgctaaatggaac |
22505176 |
T |
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| Q |
227 |
gatagcattttcgtgccaaacacacgaatgcggtatc |
263 |
Q |
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| T |
22505177 |
gatagcattttcgtgccaaacacacgaatgcggtatc |
22505213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 22504097 - 22504219
Alignment:
| Q |
13 |
cagattggatatcataaagtaaaataaagtttcaattaacataaaataaaagaaagttaagaaacta------agttcgacgagcagaaagtaaaataaa |
106 |
Q |
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| T |
22504097 |
cagattggatagcataaagtaaaataaagtttcaattaacataaagtaaaagaaagttaagaaactaataattagttcgacgagcagaaagtaaaataaa |
22504196 |
T |
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| Q |
107 |
ctttactttgagaaaactagcat |
129 |
Q |
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| T |
22504197 |
ctttactttgagaaaactagcat |
22504219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 29530691 - 29530637
Alignment:
| Q |
25 |
cataaagtaaaataaagtttcaattaacataaaataaaagaaagttaagaaacta |
79 |
Q |
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| T |
29530691 |
cataaagtaaaagaaagttacaattaacataaagtaaaagaaagttaagaaacta |
29530637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 18642962 - 18643005
Alignment:
| Q |
164 |
agttcaccatgcatgcaataatgtttttattgatattattataa |
207 |
Q |
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| T |
18642962 |
agttcaccatgcatgcattaatgtttttattgatattattataa |
18643005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 18642763 - 18642800
Alignment:
| Q |
42 |
tttcaattaacataaaataaaagaaagttaagaaacta |
79 |
Q |
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| T |
18642763 |
tttcaattaacatagagtaaaagaaagttaagaaacta |
18642800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 13068489 - 13068544
Alignment:
| Q |
207 |
agaaaaatgttaaatggcacgatagcattttcgtgccaaacacacgaatgcggtat |
262 |
Q |
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| T |
13068489 |
agaaaaatgttatatagcacgatagcattttcttgcaaaacacacgaatgcggtat |
13068544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 25590385 - 25590342
Alignment:
| Q |
164 |
agttcaccatgcatgcaataatgtttttattgatattattataa |
207 |
Q |
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| T |
25590385 |
agttcaccatgcatgcatcaatatttttattgatattattataa |
25590342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 38879702 - 38879641
Alignment:
| Q |
196 |
atattattataagaaaaatgttaaatggcacgatagcattttcgtgccaaacacacgaatgc |
257 |
Q |
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|||| |||| |||||||||| ||||| |||||||| | ||||||||| || ||||||||||| |
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| T |
38879702 |
atataattaaaagaaaaatgctaaatagcacgataactttttcgtgctaatcacacgaatgc |
38879641 |
T |
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