View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_54 (Length: 258)

Name: NF18078_low_54
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_54
NF18078_low_54
[»] chr1 (2 HSPs)
chr1 (13-257)||(335208-335455)
chr1 (159-247)||(27682110-27682198)
[»] chr7 (3 HSPs)
chr7 (159-247)||(26962831-26962919)
chr7 (159-196)||(30805935-30805972)
chr7 (159-196)||(30807294-30807331)
[»] chr4 (1 HSPs)
chr4 (159-247)||(9984184-9984272)
[»] chr8 (1 HSPs)
chr8 (159-242)||(37695253-37695336)
[»] chr3 (4 HSPs)
chr3 (159-242)||(33769269-33769354)
chr3 (159-247)||(33779835-33779923)
chr3 (159-196)||(37830952-37830989)
chr3 (159-196)||(39465441-39465478)
[»] chr2 (1 HSPs)
chr2 (159-196)||(4245408-4245445)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 335208 - 335455
Alignment:
Q  13 aaaattaacaaaatgcaagttacacaatagattaatagtagaattcatattaaatgnnnnnnnnn---tcaaacacgctgaaattgagtaaaaacaaacg 109  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  335208 aaaattaacaaaatacaaattacacaatagattaacagtagaattcatattaaataaaaaaaataaaatcaaacacgctgaaattgagtaaaaacaaacg 335307  T
Q  110 cattgaattatgttaatatatttattataccgggtttataatatcatctgaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatc 209  Q
    ||||||||||||||||||||||||||||||| ||||  ||  |||||| ||||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  335308 cattgaattatgttaatatatttattataccaggttcgtatcatcatccgaccttagctcagttggtagagcggaggactgtagttgtttaacagacatc 335407  T
Q  210 cttagatcactgatttgaatccggtaagtcggatttttgtttttgctt 257  Q
    ||||| |||||| || |||| ||||| |||||||||||||||||||||    
T  335408 cttaggtcactggttcgaattcggtaggtcggatttttgtttttgctt 335455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 27682198 - 27682110
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatccttagatcactgatttgaatccggtaagtcggattttt 247  Q
    ||||||||||||||||||||||||| |||| ||||||| | || |||||||||||| |||||| || |||||||||| |||||||||||    
T  27682198 gaccttagctcagttggtagagcggaggactgtagttggtcaacagacatccttaggtcactggttcgaatccggtaggtcggattttt 27682110  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 26962831 - 26962919
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatccttagatcactgatttgaatccggtaagtcggattttt 247  Q
    ||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||| |||||| || |||||||||| |||||||||||    
T  26962831 gaccttagctcagttggtagagcggaggactgtagttggttaacagacatccttaggtcactggttcgaatccggtaggtcggattttt 26962919  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 30805935 - 30805972
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttg 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  30805935 gaccttagctcagttggtagagcggaggactgtagttg 30805972  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 30807294 - 30807331
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttg 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  30807294 gaccttagctcagttggtagagcggaggactgtagttg 30807331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 9984272 - 9984184
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatccttagatcactgatttgaatccggtaagtcggattttt 247  Q
    ||||||||||||||||||||||||| |||| ||||||||| || ||| |||||||| |||||| || |||||||||| |||||| ||||    
T  9984272 gaccttagctcagttggtagagcggaggactgtagttgttcaacagatatccttaggtcactggttcgaatccggtaggtcggaatttt 9984184  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 37695253 - 37695336
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatccttagatcactgatttgaatccggtaagtcgga 242  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||| |||||||||||| |||||| || |||||||||| ||||||    
T  37695253 gaccttagctcagatggtagagcggaggactgtagttggttaacagacatccttaggtcactggttcgaatccggtaggtcgga 37695336  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 33769354 - 33769269
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagtt-gtttaaa-agacatccttagatcactgatttgaatccggtaagtcgga 242  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||| |||||| || |||||||||| ||||||    
T  33769354 gaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 33769269  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 33779923 - 33779835
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttgtttaaaagacatccttagatcactgatttgaatccggtaagtcggattttt 247  Q
    ||||||||||||||||||||||||| |||| ||||||| |    ||| |||||||| |||||| || |||||||||| |||||| ||||    
T  33779923 gaccttagctcagttggtagagcggaggactgtagttggtacgcagatatccttaggtcactggttcgaatccggtaggtcggaatttt 33779835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 37830952 - 37830989
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttg 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  37830952 gaccttagctcagttggtagagcggaggactgtagttg 37830989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 39465441 - 39465478
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttg 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  39465441 gaccttagctcagttggtagagcggaggactgtagttg 39465478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 4245408 - 4245445
Alignment:
Q  159 gaccttagctcagttggtagagcgggggacagtagttg 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  4245408 gaccttagctcagttggtagagcggaggactgtagttg 4245445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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