View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_6 (Length: 548)
Name: NF18078_low_6
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 113 - 529
Target Start/End: Complemental strand, 3239776 - 3239359
Alignment:
| Q |
113 |
gcataacaatagaattcaacacatacatgcataaatattttaatacacatagtaagataacaaaatagtgcatgttcatgcaatagaaaaataacaaaag |
212 |
Q |
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| T |
3239776 |
gcataacaatagaattcaacacatacatgcataaatattttaatacacatagtaagataacaaaatagtgcatgttcatgcaatagaaaaataacaaaag |
3239677 |
T |
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| Q |
213 |
tctagggtgctccatatcctagtttagcatccaaatccctctccacaaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctc |
312 |
Q |
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| T |
3239676 |
tctagggtgctccatatcctagtttagcatccaaatccctctccacgaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctc |
3239577 |
T |
|
| Q |
313 |
tataagttctacattcttcctcagctttttcacatttgcttctctctggacataatttttcgtcctcatcgcagataaataagaaggc-ttcaaccagga |
411 |
Q |
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| T |
3239576 |
tataagttctacattcttcctcagctttttcacatttgcttctctctggacataatttttcgtcctcatcgcagataaataagaaggctttcaaccagga |
3239477 |
T |
|
| Q |
412 |
taaatcaaaaccaactgtctcaagttcttcccataaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatat |
511 |
Q |
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| T |
3239476 |
taaatcaaaaccaactgtctcaagttcttcccattaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatat |
3239377 |
T |
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| Q |
512 |
agaactcggcctaatgct |
529 |
Q |
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| T |
3239376 |
agaactcggcctaatgct |
3239359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 158 - 529
Target Start/End: Complemental strand, 3244336 - 3243969
Alignment:
| Q |
158 |
cacatagtaagataacaaaata--gtgcatgttcatgcaatagaaaaataacaaaagtctagggtgctccatatcctagtttagcatccaaatccctctc |
255 |
Q |
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|||||||||||||||||||| | |||||||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |
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| T |
3244336 |
cacatagtaagataacaaaaaaaagtgcatgttcatgcaa------aataacataagtctaagctgctccatagcctagtttagcatccaaatccctctc |
3244243 |
T |
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| Q |
256 |
cacaaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctctataagttctacattcttcctcagctttttcacatttgcttct |
355 |
Q |
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|||||| |||||||||||||||||||||||| ||||||| | ||| |||| ||||||| | |||| | ||||||||||| | |||||| |||| | | |
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| T |
3244242 |
tacaaattctttttctgcttcaatcaactcttctcttgctttagcatgatcactctctagagcctctatagtcttcctcagcctattcacacttgcatat |
3244143 |
T |
|
| Q |
356 |
ctctggacataatttttcgtcctcatcgcagataaataagaaggcttcaaccaggataaatcaaaaccaactgtctcaagttcttcccataaaatttgga |
455 |
Q |
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| T |
3244142 |
ctctgagcataacttttcttatcaattgcagattcaaaatatggcttcaaccaggataaatcaaaacctactgtctcaagttcttcccataaaatttgga |
3244043 |
T |
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| Q |
456 |
gacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaactcggcctaatgct |
529 |
Q |
| |
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|| |||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||| |
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| T |
3244042 |
gatgattacaagcttcttcattcatatctttcacccttttggtgtttagaaaatgtagaactcgacctaatgct |
3243969 |
T |
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