View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_66 (Length: 225)
Name: NF18078_low_66
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 35651870 - 35651682
Alignment:
| Q |
19 |
caatgatcatttagattgaaatcatgttgtccattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtca |
118 |
Q |
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| T |
35651870 |
caatgatcatttagattgaaatcatgttgtccattaattaatcaacattgaagtggttgtgttgaggaagaaatcaaatccatcttttaagttgcagtca |
35651771 |
T |
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| Q |
119 |
agattagtaattggatgcttcactctcaaactaatagattgattgnnnnnnnngtttgtttgaagtaggtgtccattttaaaacaggatat |
209 |
Q |
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| T |
35651770 |
agattagtaattggatgcttccctctcaaactaatagattgattgttttttt--tttgtttgaagtaggtgtccattttaaaacaggatat |
35651682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 26157509 - 26157316
Alignment:
| Q |
19 |
caatgatcatttagattgaaatcatgttgtccattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtca |
118 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26157509 |
caattatcatttagattgaaatcatgttttccattaattaatcaacattgaagtggttgggtggaggaagaaatcaaatccatcttttaagttgcagtca |
26157410 |
T |
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| Q |
119 |
agattagtaattggatgcttcactctcaaactaatagattgattg---nnnnnnnngtttgtttgaagtaggtgtccattttaaaacaggatat |
209 |
Q |
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| T |
26157409 |
agattagtaattggatgcttcactctcaaactaatagattgattgtttttttttgtttttgttttaagtaggtgtccattttaaaacaggatat |
26157316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 2217541 - 2217398
Alignment:
| Q |
19 |
caatgatcatttagattgaaatcatgttgtccattaattaatcaacattgaagtggttgggttgaggaagaaatcaaatccatcttttaagttgcagtca |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||| |||||| ||| |
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| T |
2217541 |
caatgatcattg-gattgaaatcatgttgtccattaattaatcaatattgaagtggttgggtgggggaagaaatcaaatccatcttttacgttgcattca |
2217443 |
T |
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| Q |
119 |
agattagtaattggatgcttcactctcaaactaatagattgattg |
163 |
Q |
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| T |
2217442 |
agattagtaattgaatgcttcactctcaaaccaatggattgattg |
2217398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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