View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_68 (Length: 224)
Name: NF18078_low_68
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 40929034 - 40929225
Alignment:
| Q |
18 |
accaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccaacagaggaaatacgagtag |
117 |
Q |
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| T |
40929034 |
accaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccaccagaggaaatacgagtag |
40929133 |
T |
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| Q |
118 |
caaattaccaggagggagaccaggatcaactttgtttgaatatttattatcattagcttattatgttagttttctagattgtatgagtattat |
210 |
Q |
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| T |
40929134 |
caaattaccaggagggagaccaggatcaactttgtttgaata-ttattatcattagcttattatgttagttttctagattgtatgagtattat |
40929225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 48504730 - 48504539
Alignment:
| Q |
19 |
ccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccaac-agaggaaatacgagtag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |
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| T |
48504730 |
ccaccaccaccccgccaccaaagccatatagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccaccaagaggaaatacgagctg |
48504631 |
T |
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| Q |
118 |
caaattaccaggagggagaccaggatcaactttgtttgaatatttattatcattagcttattatgttagttttctagattgtatgagtattat |
210 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48504630 |
caaattaccaggagggagaccacgatcaaatttgtttgaata-ttattatcattagcttattatgttagttctctagattgtatgagtattat |
48504539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 19286511 - 19286460
Alignment:
| Q |
47 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgcca |
98 |
Q |
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|||||||||||||| | | |||||||||||||| |||||||||| ||||||| |
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| T |
19286511 |
tagaagaggacctagaataacaatccatcattcttcctttgttccgatgcca |
19286460 |
T |
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