View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_7 (Length: 540)
Name: NF18078_low_7
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 54396025 - 54395517
Alignment:
| Q |
18 |
gttactcctcttagtttggggttggaaactgctggtggtgttatgacgactttgattccaaggaacacgacgattcctactaagaaggagcagattttct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54396025 |
gttactcctcttagtttggggttggaaactgctggtggtgttatgacgactttgattccaaggaacacgacgattcctacgaagaaggagcagattttct |
54395926 |
T |
|
| Q |
118 |
caacttactcagataaccaacctggtgttttgattcaagtttttgaaggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395925 |
caacttactcagataaccaacctggtgttttgattcaagtttttgaaggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcac |
54395826 |
T |
|
| Q |
218 |
tggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagct |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395825 |
tggtattcctcctgctccaagaggtgtaccacagatcaatgtttgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagct |
54395726 |
T |
|
| Q |
318 |
ggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagagg |
417 |
Q |
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| T |
54395725 |
ggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagagg |
54395626 |
T |
|
| Q |
418 |
acgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattatgcttataatatgaggaatacaataaaggatgagaagattggtgggaagtt |
517 |
Q |
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| T |
54395625 |
atgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaattatgcttataatatgaggaatacaattaaggatgagaagattggtgggaagtt |
54395526 |
T |
|
| Q |
518 |
gagtcatga |
526 |
Q |
| |
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||||||||| |
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| T |
54395525 |
gagtcatga |
54395517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 507
Target Start/End: Original strand, 23588350 - 23588788
Alignment:
| Q |
69 |
ttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtg |
168 |
Q |
| |
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|||||||| || ||||| || |||||||| ||||||||||| | || ||||| ||||| ||||| ||||||||||| ||||||||||| | |||||| | |
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| T |
23588350 |
ttgattcctagaaacacaaccattcctaccaagaaggagcaagtgttttcaacctactctgataatcaacctggtgtgttgattcaagtctatgaaggcg |
23588449 |
T |
|
| Q |
169 |
aacgtgcaagaacaaaggataataatcttcttgggaaa-tttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcg |
267 |
Q |
| |
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|| | |||| || ||||| ||| || ||||| || ||||| | | ||||| |||||||||||||||||||| || ||||||| ||| || || | |
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| T |
23588450 |
aaagaacaaggactcgtgataacaat-ttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttg |
23588548 |
T |
|
| Q |
268 |
acattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaa |
367 |
Q |
| |
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|||||||||| ||||| || ||||| || || || || || || ||| | || ||| |||||||| || ||||| ||||| ||||| ||| | ||| |
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| T |
23588549 |
acattgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaa |
23588648 |
T |
|
| Q |
368 |
ggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattat |
467 |
Q |
| |
|
|||||| || |||||||||||| | || || || ||||| ||| | |||||||| ||| || |||||||||||||| |||||| |||||||||| ||| |
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| T |
23588649 |
ggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgcacttgagaactat |
23588748 |
T |
|
| Q |
468 |
gcttataatatgaggaatacaataaaggatgagaagattg |
507 |
Q |
| |
|
|| || || |||||||| ||||| || || || ||||||| |
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|
| T |
23588749 |
gcctacaacatgaggaacacaatcaaagacgacaagattg |
23588788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 23597352 - 23597425
Alignment:
| Q |
219 |
ggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||| || || ||||| ||||| ||||| || ||||| |
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| T |
23597352 |
ggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaa |
23597425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 42 - 388
Target Start/End: Original strand, 8018003 - 8018349
Alignment:
| Q |
42 |
gaaactgctggtggtgttatgacgactttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctg |
141 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||| || ||||| || ||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
8018003 |
gaaactgctggtggtgtcatgactgtattaattccaaggaacaccacaattccaaccaagaaggagcaagttttctctacttactcagataaccaacctg |
8018102 |
T |
|
| Q |
142 |
gtgttttgattcaagtttttgaaggtgaacgtgcaagaacaaaggataataatcttcttggg-aaatttgaactcactggtattcctcctgctccaaggg |
240 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| | |||||||| | || || || ||| ||||| ||||| || || |||| |||||||| || || | | |
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| T |
8018103 |
gtgtgttgatccaagtttatgaaggtgagagagcaagaaccagagacaacaa-cttgttgggaaaattcgagctttctggcattcctccagcaccccgtg |
8018201 |
T |
|
| Q |
241 |
gtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgat |
340 |
Q |
| |
|
|||| || || |||| || || |||||||||||||| |||||||| ||||| || |||||||| || |||||| |||| |||||||||||| || || |
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| T |
8018202 |
gtgttcctcaaatcacagtttgcttcgacattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaactgggcagaagaacaagattaccat |
8018301 |
T |
|
| Q |
341 |
cacgaatgataaggggaggttgagcaaggaagagatagagaagatggt |
388 |
Q |
| |
|
||| ||||| || || |||||| |||||||| || ||||||||||| |
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|
| T |
8018302 |
caccaatgacaaaggtaggttgtctaaggaagaaattgagaagatggt |
8018349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 69 - 403
Target Start/End: Complemental strand, 8102218 - 8101884
Alignment:
| Q |
69 |
ttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtg |
168 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||||||||| ||||||| || || ||||| |||||||||||||||||||| ||||||| |||||||| |
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|
| T |
8102218 |
ttgattccaaggaacactaccattccaaccaagaaggagcaagttttctctacgtattcagacaaccaacctggtgttttgatccaagtttatgaaggtg |
8102119 |
T |
|
| Q |
169 |
aacgtgcaagaacaaaggataataatcttcttggg-aaatttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcg |
267 |
Q |
| |
|
| | | ||||| |||||||| || ||| ||||| || ||||| || | || |||||||| || || | ||||| || ||||||| ||| ||||| | |
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|
| T |
8102118 |
agagaaccagaaccaaggataacaa-cttgttgggtaagtttgagctttccggaattcctccagcaccccgcggtgttcctcagatcactgtttgttttg |
8102020 |
T |
|
| Q |
268 |
acattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaa |
367 |
Q |
| |
|
| |||||||| |||||||| ||||| || |||||||| || |||||| | || |||||||||||| || ||||| || |||||||| |||||| || |
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|
| T |
8102019 |
atattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaaccgggcagaagaacaagattaccatcaccaacgataagggaaggttgtcaaa |
8101920 |
T |
|
| Q |
368 |
ggaagagatagagaagatggtgaaagatgcagagaa |
403 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||| |
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|
| T |
8101919 |
ggaagaaatcgagaagatggtccaagaagcagagaa |
8101884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 499
Target Start/End: Complemental strand, 39985191 - 39984767
Alignment:
| Q |
75 |
ccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtgaacgtg |
174 |
Q |
| |
|
|||||||| || || ||||| || ||||| || ||| ||||||| || || || || ||||| ||||| || ||||| |||||||||||||| || | |
|
|
| T |
39985191 |
ccaaggaataccactattccaacaaagaaagaacaggttttctctacatattctgacaaccagcctggcgtgttgatccaagtttttgaaggagagagga |
39985092 |
T |
|
| Q |
175 |
caagaacaaaggataataatcttcttgggaaa-tttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattg |
273 |
Q |
| |
|
||||||||| || || ||| || ||||| || |||||||| | || ||||||||||| || || ||||| || || |||| ||| || || ||||||| |
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|
| T |
39985091 |
caagaacaagagacaacaat-ttgttgggcaagtttgaactttccggcattcctcctgcccccagaggtgttccccaaatcactgtgtgctttgacattg |
39984993 |
T |
|
| Q |
274 |
atgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaaggaaga |
373 |
Q |
| |
|
|||| |||||||| ||||| || ||||| ||||| |||||| |||| ||||||||| || || ||||| ||||| ||||| || | |||||||| |
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|
| T |
39984992 |
atgccaatggtatcttgaatgtctctgcagaagacaaaacaactggccagaagaacaaaatcaccatcaccaatgacaagggtagactttcaaaggaaga |
39984893 |
T |
|
| Q |
374 |
gatagagaagatggtgaaagatgcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattatgcttat |
473 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||| ||| | || || |||||| |||||||| || ||||| |||||| || | || || ||||| || |
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|
| T |
39984892 |
cattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaagagcataagaagaaggtcgaggccaagaatgcattggaaaactatgcatac |
39984793 |
T |
|
| Q |
474 |
aatatgaggaatacaataaaggatga |
499 |
Q |
| |
|
|| |||||||| || || |||||||| |
|
|
| T |
39984792 |
aacatgaggaacaccattaaggatga |
39984767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 17648701 - 17648789
Alignment:
| Q |
225 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaac |
313 |
Q |
| |
|
||||||||||| || ||||| |||||||||| |||||| || ||||||||||| |||||||||||| | || | ||||||||| ||||| |
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| T |
17648701 |
cctcctgctcctagaggtgttccacagatcagtgtatgctttgacattgatgctaatggtatattggatgtctttgctgaagacaaaac |
17648789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 17706448 - 17706530
Alignment:
| Q |
225 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaaga |
307 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||| || ||||||||| | |||||||||||||| || | ||||||||| |
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|
| T |
17706448 |
cctcctgctccttggggtgttccacagatcattgtatgctttgacattgatcctaatggtatattgaatgtctttgctgaaga |
17706530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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