View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_70 (Length: 223)
Name: NF18078_low_70
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12920829 - 12920717
Alignment:
| Q |
1 |
aagtgtctccaatcttcacattgcattctctcaaattttaattaagatatatcgtaaaccatgatctgaaacagaggatatatatctaatcagttttcga |
100 |
Q |
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| T |
12920829 |
aagtgtctccaatcttcacattgcattctctcaaattctaattaagatatatcgtaaaccatgatctgaaacagaggatac----ctaatcagttttcga |
12920734 |
T |
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| Q |
101 |
agaaatacatgaatgag |
117 |
Q |
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||||||||||||||||| |
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| T |
12920733 |
agaaatacatgaatgag |
12920717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 12920194 - 12920100
Alignment:
| Q |
115 |
gagaagcctcttgttctagatgattaattggagatggccaaaaggtgaaggtctggaaagacaattggttgtctgagcaagtaaagttcaaggtg |
209 |
Q |
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| T |
12920194 |
gagaagcctcttgttctagatgtttaattggagatggcgaaaaggtgaaggtctggaaagacaattggttgcctgagcaaggaaagttcaaggtg |
12920100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21116833 - 21116801
Alignment:
| Q |
1 |
aagtgtctccaatcttcacattgcattctctca |
33 |
Q |
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| T |
21116833 |
aagtgtctccaatcttcacattgcattctctca |
21116801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 21116959 - 21116930
Alignment:
| Q |
1 |
aagtgtctccaatcttcacattgcattctc |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21116959 |
aagtgtctccaatcttcacattgcattctc |
21116930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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