View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_71 (Length: 222)
Name: NF18078_low_71
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_71 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 5571 - 5776
Alignment:
| Q |
4 |
tgggagaaacatttcaatatttcattg---atgattcataacaaacattcattgcactaataaattaaatttcacaattaaaacagaaatcaatttgttg |
100 |
Q |
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| T |
5571 |
tgggagaaacatttcaatatttcattggtgatgattcataacaaacattcattgcactaataaattaaatttcacaattaaaacagaaatcaatttgttg |
5670 |
T |
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| Q |
101 |
taactgcaaatccatgattttctcatcattttttagggcggtcaacgctcagtttgttgttaatcttaaatttccat-aaaaaatattgataaacgttgc |
199 |
Q |
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| T |
5671 |
taactgcaaatccatgattttctcatcattttttggggcggtcaacgctcagtttgttgttaatcttaaatttccataaaaaaatattgataaacgtcgc |
5770 |
T |
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| Q |
200 |
gttatt |
205 |
Q |
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|||||| |
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| T |
5771 |
gttatt |
5776 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 23829539 - 23829460
Alignment:
| Q |
32 |
tgattcataacaaacattcattgcactaataaattaaatttcacaattaaaacagaaatcaatttgttgtaactgcaaat |
111 |
Q |
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|||||||| | ||||||| ||||||| ||||| | ||||| |||| | ||||||||||| || |||||||||||| |||| |
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| T |
23829539 |
tgattcatgagaaacatttattgcacaaataagtaaaattccacagtcaaaacagaaattaagttgttgtaactgtaaat |
23829460 |
T |
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