View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_75 (Length: 204)
Name: NF18078_low_75
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 32512132 - 32512308
Alignment:
| Q |
15 |
attatactgtgaaaattgtagtaaaaatgcaataaaaagagtctagcatcacaaagatattgtaccataaatgaacgaaatgcattttgaatccgagtag |
114 |
Q |
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| T |
32512132 |
attatactgtgaaaattgtagtaaaaatgcaataaaaagagtctagcatcacaaagatattgtaccataaatgaacgaaatgcattttgaatccgagtag |
32512231 |
T |
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| Q |
115 |
cagcaatattgtgaatcaacctggaaggaactgtcctctc---catcatcaaaccttcattgggagtgctacttgat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32512232 |
cagcaatattgtgaatcaacctggaaggaactgtcctctccatcatcatcaaaccttcattgggagtgctacttgat |
32512308 |
T |
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