View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_8 (Length: 531)
Name: NF18078_low_8
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 513
Target Start/End: Complemental strand, 5420500 - 5419999
Alignment:
| Q |
16 |
attcaacagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaattgcaattttagccgtattggatgcattttgc |
115 |
Q |
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| T |
5420500 |
attcaacagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaattgcaattttagccgtattggatgcattttgc |
5420401 |
T |
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| Q |
116 |
cgcgatataattgtccaaaatgtc----actaggccgtaatctcaatttagaattatggttactggttatgcttacaaatatgcagattaaatcacactc |
211 |
Q |
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| T |
5420400 |
cgcgatataattgtccaaaatgtctgtcactaggccgtaatcacaatttagaattatggttgctggttatgcttacaaatatgcagattaaatcacactc |
5420301 |
T |
|
| Q |
212 |
aagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaagtctatctttaaagggtattctcaagcagcctaaaaggaaaatttgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420300 |
aagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaattctatctttaaagggtattctcaagcagcctaaaaggaaaatttgt |
5420201 |
T |
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| Q |
312 |
ttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcatgagaatcaaagtatttattttataaacttnnnnnnnccataaaacctgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5420200 |
ttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcatgagaatcaaagtatttattttataaacttaaaaaaaccataaaacctga |
5420101 |
T |
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| Q |
412 |
ttaacacattacacattatagaggaccctgatttattcccattctcatcataccaattatctttcacaatactatatgacacaaagattaatcagctaag |
511 |
Q |
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| T |
5420100 |
ttaacacattacacattatagaggaccctgatttattcccattctcatcataccaattatctttcacaatactatatgacacaaagattaatcagctaag |
5420001 |
T |
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| Q |
512 |
aa |
513 |
Q |
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|| |
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| T |
5420000 |
aa |
5419999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 15958697 - 15958651
Alignment:
| Q |
425 |
cattatagaggaccctgatttattcccattctcatcataccaattat |
471 |
Q |
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||||||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
15958697 |
cattatagaggaccctgatttattctcattctaatcacaccaattat |
15958651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 15958631 - 15958595
Alignment:
| Q |
435 |
gaccctgatttattcccattctcatcataccaattat |
471 |
Q |
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| T |
15958631 |
gaccctgatttattcccattctaatcacaccaattat |
15958595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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