View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_9 (Length: 526)
Name: NF18078_low_9
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 8617293 - 8617801
Alignment:
| Q |
1 |
acctcaattattgccaaactgcactatagaatttccaatcataccagcttcaacattctgcataaggcgaccctcttagttttggctgcatcatttgaaa |
100 |
Q |
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| T |
8617293 |
acctcaattattgccaaactgcactatagaatttccaatcataccagtttcaacattctgcataaggcgaccctcttagttttggctgcatcatttgaaa |
8617392 |
T |
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| Q |
101 |
aataaaacaaatagtataagagaaaggaataaccaaccattaacagaaaattgtttaaattttgacctttgattttctagacttccagacttctgatttc |
200 |
Q |
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| T |
8617393 |
aataaaacaaatagtataagagaaaggaataaccaaccattaacagaaaattgtttaaattttgacctttgattttctagacttccagacttctgatttc |
8617492 |
T |
|
| Q |
201 |
cctggttggggaacataagaatatttctcaaaggaatttaaggctgcaactccatccatgccagagtcggtaattggtgaaaaatcctaaagcaattaaa |
300 |
Q |
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| T |
8617493 |
cctggttggggaacataagaatatttctcaaaggaatttaaggctgcaactccatccatgccagagtcggtaattggtgaaaaatcctaaagcaattaaa |
8617592 |
T |
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| Q |
301 |
aagcgattatctaactatttatatttcacaataatttcaaaagtaaagatgaaacttccgtatgtattgaatatagcaataaccactttcttaattcaat |
400 |
Q |
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| T |
8617593 |
aagcgattatctaactatttatatttcacaataatttcaaaagtaaagatgaaact----tatgtattgaatatagcaataatcactttcttaattcaat |
8617688 |
T |
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| Q |
401 |
aaaataattcaaggtcaatataccaaataggaaataaaacgaaagcaaaagaccatttggtgtagttttagtgttccatatcttcaattcaaattatagc |
500 |
Q |
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| T |
8617689 |
aaaataattcaaggtcaatataccaaataggaaataaaacgaaagcaaaagaccatttggtgtagttttagtgttccatatcttcaattcaaattatagc |
8617788 |
T |
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| Q |
501 |
cataaaattattg |
513 |
Q |
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| T |
8617789 |
cataaaattattg |
8617801 |
T |
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