View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18079_high_11 (Length: 324)
Name: NF18079_high_11
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 40484404 - 40484110
Alignment:
| Q |
16 |
cacagaagatcctttaagagtggtatggataatcagataatgtgatagt-taagacttcttgtaggacaaatttacataccagcctcctctgctaacagt |
114 |
Q |
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| T |
40484404 |
cacagaagatcctttaagagtggtatggataatcatataatgtgatagtgtaagacttcttgtaggacaaatttacataccagcctcctctgctaacagt |
40484305 |
T |
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| Q |
115 |
atccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacg |
214 |
Q |
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| T |
40484304 |
atccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacg |
40484205 |
T |
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| Q |
215 |
ggatcctttgtatatttaacaacaacttcaacttataaacgaacacattactcagccacatgtgttttatatattacgtatatttaacaaaaact |
309 |
Q |
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| T |
40484204 |
ggatcctttgtatatttaacaaaaacttcaacttataaacgaacacattactcagccacatgtgttttatatattacgtatatttaacaaaaact |
40484110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 40484127 - 40484065
Alignment:
| Q |
224 |
gtatatttaacaacaacttcaacttataaacgaacacattactcagccacatgtgttttatat |
286 |
Q |
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| T |
40484127 |
gtatatttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatat |
40484065 |
T |
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