View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18079_high_2 (Length: 546)

Name: NF18079_high_2
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18079_high_2
NF18079_high_2
[»] chr4 (2 HSPs)
chr4 (13-243)||(9598330-9598560)
chr4 (282-473)||(9598100-9598291)
[»] chr7 (2 HSPs)
chr7 (13-243)||(3316936-3317165)
chr7 (282-479)||(3316697-3316894)
[»] chr1 (6 HSPs)
chr1 (13-243)||(34498446-34498676)
chr1 (282-477)||(34498208-34498404)
chr1 (324-469)||(34479821-34479966)
chr1 (145-240)||(34484356-34484451)
chr1 (26-168)||(37920763-37920905)
chr1 (146-232)||(34520055-34520141)
[»] chr5 (2 HSPs)
chr5 (479-528)||(6500583-6500632)
chr5 (481-529)||(6500954-6501002)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 9598560 - 9598330
Alignment:
Q  13 gagaatgcaaagacacgagaatcatgagaatgagctgaacattcttatgatttggtacctacaaaacaacaagcttccagatgatgtgacagtttctgat 112  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9598560 gagaatgcaaagacacgacaatcatgagaatgagttgaacattcttatgatttggtacctacaaaacaacaagcttccagatgatgtgacagtttctgat 9598461  T
Q  113 ttgaaagacttggataagttgattgnnnnnnntatgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaattttatg 212  Q
    |||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9598460 ttgaaagacttggataagttgattgaaaaaaatctgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaactttatg 9598361  T
Q  213 ttgttatttttattgatgttatttcaattgg 243  Q
    |||||||||||| ||||||||||||||||||    
T  9598360 ttgttatttttactgatgttatttcaattgg 9598330  T

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Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 282 - 473
Target Start/End: Complemental strand, 9598291 - 9598100
Alignment:
Q  282 tatatatcaccagtctttcgcttgttctaatttgtgtttttcaatgttttatttgacattatcaatttttcttattgataaagaactaatcatgaatctg 381  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9598291 tatatatcaccagtctttcgcttgttctattttgtgtttttcaatgttttatttgacattatcaatttttcttattgataaagaactaatcctgaatctg 9598192  T
Q  382 atctagaattaggtaggaaattgatcttctatttcgtttaaggttatcattttcatttgaaacaaactgaaaatcttagaagattttgggtg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9598191 atctagaattaggtaggaaattgatcttctatttcgtttaaggttatcattttcatttgaaacaaactgaaaatcttagaagattttgggtg 9598100  T

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Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 3317165 - 3316936
Alignment:
Q  13 gagaatgcaaagacacgagaatcatgagaatgagctgaacattcttatgatttggtacctacaaaacaacaagcttccagatgatgtgacagtttctgat 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  3317165 gagaatgcaaagacacgacaatcatgagaatgagctgaacattcttatgttttggtacctgcaaaacaacaagctgccagatgatgtgaccgtttctgat 3317066  T
Q  113 ttgaaagacttggataagttgattgnnnnnnntatgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaattttatg 212  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  3317065 ttgaaagacttggataagttaattgaaaaaaatatgaaggaaattgatgacaagatggcttcacttagtttatcaaattgatgttttctaaaa-tttatg 3316967  T
Q  213 ttgttatttttattgatgttatttcaattgg 243  Q
    |||| ||||||||||||||||||||||||||    
T  3316966 ttgtgatttttattgatgttatttcaattgg 3316936  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 282 - 479
Target Start/End: Complemental strand, 3316894 - 3316697
Alignment:
Q  282 tatatatcaccagtctttcgcttgttctaatttgtgtttttcaatgttttatttgacattatcaatttttcttattgataaagaactaatcatgaatctg 381  Q
    |||||||||| ||| |||| ||||||||| |||||||  ||||||| || |||| | || ||||||||||||| ||||||||||| | ||| ||||||||    
T  3316894 tatatatcactagtttttctcttgttctattttgtgtgcttcaatgcttgatttaatatcatcaatttttcttgttgataaagaattgatcctgaatctg 3316795  T
Q  382 atctagaattaggtaggaaattgatcttctatttcgtttaaggttatcattttcatttgaaacaaactgaaaatcttagaagattttgggtggcttat 479  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  3316794 atctagaattaggtaggaaatcgatcttctatttcatttaaggttatcactttcatttcaaacaaactcaaaatcttagaagattttggttggcttat 3316697  T

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Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 34498676 - 34498446
Alignment:
Q  13 gagaatgcaaagacacgagaatcatgagaatgagctgaacattcttatgatttggtacctacaaaacaacaagcttccagatgatgtgacagtttctgat 112  Q
    ||||| ||||||||| || |||| |||||||||||||||||||| ||||||||||||||| |||||||||| | | ||||||||| |||| |||||||||    
T  34498676 gagaaagcaaagacaagacaatcgtgagaatgagctgaacattcgtatgatttggtacctgcaaaacaacacggtgccagatgatatgactgtttctgat 34498577  T
Q  113 ttgaaagacttggataagttgattgnnnnnnntatgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaattttatg 212  Q
    |||| ||||||||||||||| |||        |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||    
T  34498576 ttgagagacttggataagttaattacaaaaaatatgaaagaaattgatgacaagatggcttcacttagtttatcaaactgatgttttctaaaaccttatg 34498477  T
Q  213 ttgttatttttattgatgttatttcaattgg 243  Q
    |||| ||||||||||||||||||||||||||    
T  34498476 ttgtgatttttattgatgttatttcaattgg 34498446  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 282 - 477
Target Start/End: Complemental strand, 34498404 - 34498208
Alignment:
Q  282 tatatatcaccagtctttcgcttgttctaatttgtgtttttcaatgttttatttgacattatcaatttttcttattgataaagaactaatcatgaatctg 381  Q
    |||||||||||||| ||||| |||||||| |||||||  ||||||| || || | |||| |||||||||| || ||||||||||||| ||| |||||||     
T  34498404 tatatatcaccagtttttcgtttgttctattttgtgtgcttcaatgcttgatctaacatcatcaattttttttgttgataaagaactgatcctgaatcta 34498305  T
Q  382 atctagaattaggtaggaaattgatcttctatttcgtttaaggttatcattttcatttgaaacaaactg-aaaatcttagaagattttgggtggctt 477  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||    
T  34498304 atctagaattaggtaggaaattgatcttctatttcatttaaggttatcattttcatttcacacaaactgaaaaatcttagaagattttggttggctt 34498208  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 469
Target Start/End: Complemental strand, 34479966 - 34479821
Alignment:
Q  324 aatgttttatttgacattatcaatttttcttattgataaagaactaatcatgaatctgatctagaattaggtaggaaattgatcttctatttcgtttaag 423  Q
    |||| ||||| |||||| |||||| |||||| |||||||||||  |||| | |||||| | | | |||||| | | |||| |||||||||||||||||||    
T  34479966 aatgctttatctgacatcatcaatatttcttgttgataaagaatcaatcctaaatctggtttggtattaggcatgtaattaatcttctatttcgtttaag 34479867  T
Q  424 gttatcattttcatttgaaacaaactgaaaatcttagaagattttg 469  Q
     |||||| |||||| | |||||||    ||||||||||||| ||||    
T  34479866 cttatcactttcatctcaaacaaatcagaaatcttagaagaatttg 34479821  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 34484451 - 34484356
Alignment:
Q  145 tatgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaattttatgttgttatttttattgatgttatttcaat 240  Q
    |||||||||| | ||||| ||||| |   |||||||||||||| | | ||||| ||||||| |||||||||| ||||| |||||||||||||||||    
T  34484451 tatgaaggaattggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgtgattttgattgatgttatttcaat 34484356  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 37920905 - 37920763
Alignment:
Q  26 cacgagaatcatgagaatgagctgaacattcttatgatttggtacctacaaaacaacaagcttccagatgatgtgacagtttctgatttgaaagacttgg 125  Q
    ||||| |||| |||||| ||| ||||||||||||||||| ||||| |  ||||||| ||||| || |||| | |||| ||||| ||||||||||| || |    
T  37920905 cacgacaatcgtgagaaggagttgaacattcttatgattgggtacatgaaaaacaaaaagctgccggatggtttgaccgtttcggatttgaaagagtttg 37920806  T
Q  126 ataagttgattgnnnnnnntatgaaggaaattgatgacaagat 168  Q
    ||||| | ||||       ||||||||| |||||| |||||||    
T  37920805 ataagctaattgagaaaaatatgaaggagattgataacaagat 37920763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 34520141 - 34520055
Alignment:
Q  146 atgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaattttatgttgttatttttattgatgtt 232  Q
    |||||||| |||||||||||||| | | |||| ||||||| ||| |  |||| ||| ||| |||||||||| ||||| |||||||||    
T  34520141 atgaaggagattgatgacaagattgttgcactcagtttatgaaattgttgttgtcttaaactttatgttgtgattttgattgatgtt 34520055  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 6500632 - 6500583
Alignment:
Q  479 tgttgggtcagtgacgggagcctaggggaccgtccacatcgaggcgagaa 528  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  6500632 tgttgggtaagtgaggggagcctgggggaccgtccacatcgaggctagaa 6500583  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 6501002 - 6500954
Alignment:
Q  481 ttgggtcagtgacgggagcctaggggaccgtccacatcgaggcgagaat 529  Q
    |||||| ||||| |||||||| ||||||||||||||||||||| |||||    
T  6501002 ttgggtaagtgaggggagcctgggggaccgtccacatcgaggctagaat 6500954  T

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