View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18079_high_7 (Length: 378)
Name: NF18079_high_7
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 41890314 - 41890682
Alignment:
| Q |
1 |
ccagcataatacatacacctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgataaaacaagtcttaaatttctttggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41890314 |
ccagcataatacatacacctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggttt |
41890413 |
T |
|
| Q |
101 |
cttgattcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41890414 |
cttgattcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagc |
41890513 |
T |
|
| Q |
201 |
caataattgactttttagtttcagaatcaattcatcttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtggga |
300 |
Q |
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| T |
41890514 |
caataattgactttttagtttcagaatcaattcattttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtggga |
41890613 |
T |
|
| Q |
301 |
gcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
369 |
Q |
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| T |
41890614 |
gcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
41890682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 107 - 369
Target Start/End: Original strand, 41896022 - 41896294
Alignment:
| Q |
107 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
206 |
Q |
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| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
|
| Q |
207 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
296 |
Q |
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|| | |||| ||| | ||| ||||||| | ||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || |
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| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
|
| Q |
297 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
369 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |||||| |
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| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataat |
41896294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
110 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
193 |
Q |
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|||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
280 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
280 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
347 |
Q |
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||||||||||||| ||||||||||| | ||||| ||||| |||||||| ||| ||||||||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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