View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18079_high_8 (Length: 347)
Name: NF18079_high_8
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 43850017 - 43850342
Alignment:
| Q |
17 |
gttgttgtgttagtagggaccaccattccattgctgagctggacatctgatgtggataaacgggcccatgaaagtagagggccaattggatgaagtctca |
116 |
Q |
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| T |
43850017 |
gttgttgtgttagtagggaccaccattccattgctgagctggacatctgatgtggataaacgggcccacgaaagtagagggccaattggatgaagtctca |
43850116 |
T |
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| Q |
117 |
atgtttctttcactatggcttctaggtatggcatttttgtgatatcagcatctgtaacgttgtctttgtctcctacaacgttgtcaagctcttctcgaag |
216 |
Q |
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| T |
43850117 |
atgtttctttcactatggcttctaggtatggcatttttgtgatatcagcatctgtaacgttgtctttgtctcctacaacgttgtcaagctcttctcgaag |
43850216 |
T |
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| Q |
217 |
tcttgtttggatttgttggttcaaaataagctctgccattatccattcagtaagaagtgttgttgtatccgtgccacgaaatatcatctcctgcaaaccc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43850217 |
tcttgtttggatttgttggttcaaaataagctctgccattatccattcagtaagaagtgctgttgtatccgtgccacgaaatatcatctcctgcaaaccc |
43850316 |
T |
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| Q |
317 |
aactcatcaaaaaatatattcttgga |
342 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
43850317 |
aactcatcaaaaaatatatttttgga |
43850342 |
T |
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