View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18079_high_9 (Length: 346)
Name: NF18079_high_9
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 41890323 - 41889993
Alignment:
| Q |
1 |
attatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgttgcaatcatccca |
100 |
Q |
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| T |
41890323 |
attatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgttgcaattatccca |
41890224 |
T |
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| Q |
101 |
aactttaaccacttattgtatgattaatttcaaaaaagtaatagctcacataaagtagcatatgttgaaggcatagagtaggagtaatatcttacaaata |
200 |
Q |
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| T |
41890223 |
aactttaaccacttattgtatgattaatttcaaaaaagtaatagctcacataaagtagcacatgttgaaggcatagagtaggagtaatatcttacaaata |
41890124 |
T |
|
| Q |
201 |
tcaaatatgttcaaagaagctgcaaatcatgtatgaatgttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatg |
300 |
Q |
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| T |
41890123 |
tcaaatatgttcaaagaagctgcaaatcatgtatgaatgttggttttcttgagttttcatatcaaaataactagttgttaataagattatcttgctcatg |
41890024 |
T |
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| Q |
301 |
taatcctgaatgtccaattgaagttgatcct |
331 |
Q |
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| T |
41890023 |
taatcctgaatgtccaattgaagttgatcct |
41889993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 41895880 - 41895772
Alignment:
| Q |
1 |
attatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgttgcaatcatccca |
100 |
Q |
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|||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||| |
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| T |
41895880 |
attatgttggcatctacaattggtggcttgaggaacattattgttgattcatccacttatagtttttatacctaaagtgcatgatgttacaattatccca |
41895781 |
T |
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| Q |
101 |
aactttaac |
109 |
Q |
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| T |
41895780 |
aactttaac |
41895772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 41881725 - 41881653
Alignment:
| Q |
239 |
gttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgtaatcctgaat |
311 |
Q |
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| T |
41881725 |
gttggttttcttgagttttcatatcagaataactaattgttaatgagattatcttgctaatgtaatcttgaat |
41881653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22552242 - 22552317
Alignment:
| Q |
1 |
attatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaa |
76 |
Q |
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|||||||||||||| || |||||||||| ||||| || |||||||||||||| | ||||| ||||| ||||||| |
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| T |
22552242 |
attatgctggcatccactattggtggcttcaggaatatcattgctgattcatcatcatatagcttctacacctaaa |
22552317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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