View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18079_low_13 (Length: 259)
Name: NF18079_low_13
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 19343081 - 19343284
Alignment:
| Q |
1 |
aacccttaacaagattagcttcagattttgaaaactttggaagccttttccctactctaattttcattgattttggataatctccaaaaatcaatgggtc |
100 |
Q |
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| T |
19343081 |
aacccttaacaagattagcttcagattttgaaaactttggaagccttttccctactctaattttcattgattttggataatctccaaaaatcaatgggtc |
19343180 |
T |
|
| Q |
101 |
aagaaacctgtataggaagataacaactttaattagtttatcaatcaatatagttaattatagcttatttaaatgttgacaaaagcaacattatatacac |
200 |
Q |
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| T |
19343181 |
aagaaacctgtgaaggaagagaacaactttaattagttt----atcaatatagttaattatagcttatttaagtgtcgacataagcaacattatatacac |
19343276 |
T |
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| Q |
201 |
aaaaatac |
208 |
Q |
| |
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|||||||| |
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| T |
19343277 |
aaaaatac |
19343284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 32276846 - 32276956
Alignment:
| Q |
1 |
aacccttaacaagattagcttcagattttgaaaactttggaagccttttccctactctaattttcattgattttggataatctccaaaaatcaatgggtc |
100 |
Q |
| |
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|||||||||||||| ||| || ||| ||||||||||| ||||| || |||||||| || ||||||| | |||||||||||||| ||||| || || |
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| T |
32276846 |
aacccttaacaagagcagcctcggatgaagaaaactttggcagcctgtttcctactctgcttctcattgaactcggataatctccaaacatcaaaggatc |
32276945 |
T |
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| Q |
101 |
aagaaacctgt |
111 |
Q |
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| T |
32276946 |
aagaaacctgt |
32276956 |
T |
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