View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18079_low_2 (Length: 563)
Name: NF18079_low_2
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18079_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Complemental strand, 37958257 - 37957724
Alignment:
| Q |
12 |
agggaaaatgaatgtgttattctcaatgtcattatcatcataggttgttttgtggcttaattttggactaagataattatagtctttaagatttttgggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958257 |
agggaaaatgaatgtgttattctcaatgtcattaccatcataggttgttttgcggcttaattttggactaagataattatagtctttaagatttttgggg |
37958158 |
T |
|
| Q |
112 |
tggtggttggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaataaaaggtttgtggggtt |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958157 |
tggtgattggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaataaaaggtttgtggggtt |
37958058 |
T |
|
| Q |
212 |
gtggaggacattgaagatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggt |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958057 |
gtggaggacattgaagatttccagctagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggt |
37957958 |
T |
|
| Q |
312 |
tgttgaatgttgaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37957957 |
tgttgaatgtggaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgtt |
37957858 |
T |
|
| Q |
412 |
cttggtgttgatggagaaacaagagcttgctcaataagctgttgctctgccatttctgaaatctcaacaagcttatgctctgccattggggagaagcaat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37957857 |
cttggtgttgatggagaaacaagagcttgctcaataagcttttgctctgccatttctgaaatctcaacaagcttatgctccgccattggggagaagcaat |
37957758 |
T |
|
| Q |
512 |
aaatagtatatttcaagataatgcatgtataaaa |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37957757 |
aaatagtatatttcaagataatgcatgtataaaa |
37957724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 87 - 478
Target Start/End: Complemental strand, 37952447 - 37952056
Alignment:
| Q |
87 |
attatagtctttaagatttttggggtggtggttggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtg |
186 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
37952447 |
attaaagtcttggagatttttggggtgttggttggttgagagatggttgaaatttgctgaagattcgatgacggtaaaagtgacggagtcattttgagtg |
37952348 |
T |
|
| Q |
187 |
caaagaataaaaggtttgtggggttgtggaggacattgaagatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatg |
286 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37952347 |
caaagaataaaaggtttgtggggtggtagaggacagtgaagatttccagcaagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatg |
37952248 |
T |
|
| Q |
287 |
gaagtgttgttttacaaaaatgggttgttgaatgttgaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgt |
386 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37952247 |
gaagtgttgttttagaaaaatgggttgttgaatgaggaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcgaggaatgt |
37952148 |
T |
|
| Q |
387 |
gagaggaagagaagttgttgttgttcttggtgttgatggagaaacaagagcttgctcaataagctgttgctctgccatttctgaaatctcaa |
478 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
37952147 |
gagaggaagaaaagttgttgttgttcttggtgttgatggaaaaacaacagtttgctcaataagcttatgatttgccatttgtgaaatctcaa |
37952056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 37896933 - 37897327
Alignment:
| Q |
12 |
agggaaaatgaatgtgttattctcaatgtcattatcatcataggttgttttgtggcttaattttggactaagataattatagtctttaagatttttgggg |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
37896933 |
agggaaaatgaatgtgttattttcaatgtcattatcatcataggttgttttgtgtgttaactttggaacaagatgattatagtctttaagatttttggga |
37897032 |
T |
|
| Q |
112 |
tggtggttggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaataaaaggtttgtggggtt |
211 |
Q |
| |
|
||||| |||| ||| ||||||||||||| ||||||| ||||| || |||||| | |||||| || ||||||||| | || ||||| |||||||||||| |
|
|
| T |
37897033 |
tggtgattggctgaaagatggttgaaattcgccgaggtttcgatgacggtaaaggtgacagaatctttttgagtgtagaggataaagggtttgtggggtg |
37897132 |
T |
|
| Q |
212 |
gtggaggacattgaagatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggt |
311 |
Q |
| |
|
|||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
37897133 |
gtggtggagagattagatttccagcaagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagt |
37897232 |
T |
|
| Q |
312 |
tgttgaatgttgaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttg |
406 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||| |||||| || ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37897233 |
tgttgaatgaggaaagtgatagaagaattggcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaaattgttg |
37897327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 226 - 409
Target Start/End: Original strand, 44905646 - 44905830
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgttga |
324 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||| | ||| ||| | |
|
|
| T |
44905646 |
agatttccggcaagagggaagaaatgttgaagagtaagagaaagagatttttttgagcgatggaagtgttgttttgcaaaaatggttggttaaataagca |
44905745 |
T |
|
| Q |
325 |
aagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttg |
409 |
Q |
| |
|
|| | | |||||||| || || ||| ||||||||| | |||||| || |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
44905746 |
aaagggtcgaagaatatgcatttaacgtagactggatcagcaaaatgctagtcaaaaaatgtgagaggaagataagttgttgttg |
44905830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 226 - 409
Target Start/End: Original strand, 28166801 - 28166985
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgttga |
324 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||| | ||||||| | |
|
|
| T |
28166801 |
agatttccagcaagagggaagaaatgttgaagagtaagagaaagaaatttttttgagagaaggaagtgttgttttgcaaaaatggttggttgaataagca |
28166900 |
T |
|
| Q |
325 |
aagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttg |
409 |
Q |
| |
|
|| | | ||| |||| | || || ||||||||||| |||||| ||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
28166901 |
aaagggtcgaaaaatattcatttaatgtagactggaccagcaaaatgcaagtcaaaaaatgtgaaaggaagataagttgttgttg |
28166985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 118 - 408
Target Start/End: Original strand, 11528454 - 11528744
Alignment:
| Q |
118 |
ttggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaataaaaggtttgtggggttgtggag |
217 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||||||| | || ||| | |||||||||||||| || ||| |||| | |
|
|
| T |
11528454 |
ttggtcgagagatggttgaaatctgctgaggattcgatgatggtaaaggcgacagagtcttcttcggtgtagagaataaaaggtttttgtggtggtggtg |
11528553 |
T |
|
| Q |
218 |
gacattgaagatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggttgttga |
317 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||| | ||||| |
|
|
| T |
11528554 |
gagaaatgagatttccagcaagagggaagaaatgttgaagagtaagagaaagagattttttgagagatggtagtgttgttttgcaaaaatggttggttga |
11528653 |
T |
|
| Q |
318 |
atgttgaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgtt |
408 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11528654 |
ataagcaaaaggatagaagaataggcgtttaacgtagactggacctgcaaaatgcaagtcgaggaatgtgagaggaagagaagttgttgtt |
11528744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 94 - 449
Target Start/End: Original strand, 39712822 - 39713177
Alignment:
| Q |
94 |
tctttaagatttttggggtggtggttggttgatagatggttgaaatctgccgaggattcgacgatggtaaaagcgacagagtcattttgagtgcaaagaa |
193 |
Q |
| |
|
||||| |||||||| ||||||| ||| |||| |||||||||||||||| ||||||||| |||||||| || ||| ||||| | || ||||| ||| |
|
|
| T |
39712822 |
tctttgagatttttcaggtggtgtttgtttgagagatggttgaaatctgacgaggattcaacgatggtgaagaagacggagtcttcttcggtgcagcgaa |
39712921 |
T |
|
| Q |
194 |
taaaaggtttgtggggttgtggaggacattgaagatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgt |
293 |
Q |
| |
|
|||||||||| || ||| |||| ||| | ||||||||||| |||||||| ||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
39712922 |
taaaaggtttttgtggtggtggtggagaaatgagatttccagcaagagggaaaaaatgttgaagagcacatgaaagagactgtttgagagatggaagtgt |
39713021 |
T |
|
| Q |
294 |
tgttttacaaaaatgggttgttgaatgttgaaagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagagga |
393 |
Q |
| |
|
|||||| ||||||||| | || ||||| |||| |||||||||||||||||| | | |||| |||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
39713022 |
tgttttgcaaaaatggttggtagaatgaggaaaaggatagaagaataagcgtttagcgtagattggaccagcaaaatgcaagtcaagaaatgtgagagga |
39713121 |
T |
|
| Q |
394 |
agagaagttgttgttgttcttggtgttgatggagaaacaagagcttgctcaataag |
449 |
Q |
| |
|
||| |||| ||||||| | || ||||| ||| | ||||||| |||||||||||| |
|
|
| T |
39713122 |
agataagtagttgttgctgttcttgttgcaggaaacacaagagtttgctcaataag |
39713177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 3149715 - 3149622
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaat |
319 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
3149715 |
agatttccagcaagagggaagaaatgttgaagagtaagagaaagagatttttcgagagatggaagtgttgttttgcaaaaatggctggttgaat |
3149622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 24549682 - 24549632
Alignment:
| Q |
496 |
attggggagaagcaataaatagtatatttcaagataatgcatgtataaaat |
546 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
24549682 |
attggggagaaacaataaataatatatttcaagataataaatttataaaat |
24549632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 226 - 449
Target Start/End: Original strand, 34539264 - 34539487
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgttgaa |
325 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||||||| | ||||||| || |
|
|
| T |
34539264 |
agatttccggcaagagggaagaaatgttgaagagtaagagaaagagattttttgagagatggaagtgttgttttgcgaaaatggttggttgaataagcaa |
34539363 |
T |
|
| Q |
326 |
agtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgttcttggtgttgatgg |
425 |
Q |
| |
|
| | | |||||||| || || || |||| |||||| |||||| ||||||||| ||| ||||||||||| |||||||||||||| ||| ||||| | | |
|
|
| T |
34539364 |
aagggtcgaagaatatgcatttaatgtagattggaccagcaaaatgcaagtcaaaaaatatgagaggaagataagttgttgttgtttttgttgttgctcg |
34539463 |
T |
|
| Q |
426 |
agaaacaagagcttgctcaataag |
449 |
Q |
| |
|
| ||||||||| |||||||||||| |
|
|
| T |
34539464 |
aaaaacaagagtttgctcaataag |
34539487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 226 - 409
Target Start/End: Complemental strand, 11148931 - 11148747
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgttga |
324 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||| | ||||||| | |
|
|
| T |
11148931 |
agatttccagcaaaagggaagaaatgttgaacagtaagagaaagagatttttttgagagatggaagtgttgttttgcaaaaatggttggttgaataagta |
11148832 |
T |
|
| Q |
325 |
aagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttg |
409 |
Q |
| |
|
|| | | |||||||| || || ||| ||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11148831 |
aaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaagtcaaaaaatgtgagaggaagataagttgttgttg |
11148747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 226 - 449
Target Start/End: Original strand, 38757782 - 38758006
Alignment:
| Q |
226 |
agatttccagccagagggaagaaatgttgaagagtaagagaaagaga-gtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgttga |
324 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| | ||||||| | |
|
|
| T |
38757782 |
agatttccggcaagagggaagaaatgttgaagagtaagagaaagagatttttttgagagatggaagtgttgttttgcaaaaatggttggttgaataagca |
38757881 |
T |
|
| Q |
325 |
aagtgatagaagaataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgttcttggtgttgatg |
424 |
Q |
| |
|
|| | | |||||||| || || ||| ||||||||||| ||||| ||||| ||| ||||| ||||||||| |||||||||||||| ||| ||||| | |
|
|
| T |
38757882 |
aaagggtcgaagaatatgcatttaacgtagactggaccaacaaaatgcaaggcaaaaaatgttagaggaagataagttgttgttgtttttgttgttgctc |
38757981 |
T |
|
| Q |
425 |
gagaaacaagagcttgctcaataag |
449 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
38757982 |
aaaaaacaagagcttgctcaataag |
38758006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 13223382 - 13223286
Alignment:
| Q |
353 |
agactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagttgttgttgttcttggtgttgatggagaaacaagagcttgctcaataag |
449 |
Q |
| |
|
|||||||||| |||||| |||||| || ||| ||||||||||| |||||||||||||| || ||||| | || ||||||||| |||||||||||| |
|
|
| T |
13223382 |
agactggaccagcaaaatgcaagtaaaaaaatttgagaggaagataagttgttgttgtttgtgttgttgctcgaaaaacaagagtttgctcaataag |
13223286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University