View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18079_low_5 (Length: 464)

Name: NF18079_low_5
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18079_low_5
NF18079_low_5
[»] chr6 (2 HSPs)
chr6 (11-161)||(34501855-34502005)
chr6 (351-427)||(9840187-9840263)
[»] chr3 (2 HSPs)
chr3 (11-161)||(18882732-18882882)
chr3 (195-266)||(10107246-10107315)
[»] chr5 (4 HSPs)
chr5 (11-161)||(19689069-19689219)
chr5 (76-161)||(19678713-19678798)
chr5 (293-427)||(36356353-36356485)
chr5 (11-84)||(19685763-19685836)
[»] chr8 (2 HSPs)
chr8 (16-161)||(586891-587036)
chr8 (16-161)||(626886-627031)
[»] scaffold0214 (4 HSPs)
scaffold0214 (181-256)||(12980-13055)
scaffold0214 (181-256)||(17054-17129)
scaffold0214 (181-256)||(19438-19513)
scaffold0214 (181-256)||(26996-27071)
[»] chr7 (1 HSPs)
chr7 (185-256)||(23467757-23467828)
[»] chr2 (1 HSPs)
chr2 (181-256)||(4577223-4577298)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 34502005 - 34501855
Alignment:
Q  11 cacagaaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgc 110  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34502005 cacaaaaggaataaacaacatagaagaaaaattaaaccggatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgc 34501906  T
Q  111 aattctccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34501905 aattctccaaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 34501855  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 9840187 - 9840263
Alignment:
Q  351 ctcttgtttgatcatgtggctagtaataatagtgatcatacacataattgactcaataaatgaaaaagtataattta 427  Q
    |||||||||||||||||||| | |||||||  |||| |||||||||||||||||||||| ||||||| || ||||||    
T  9840187 ctcttgtttgatcatgtggccaataataatgttgataatacacataattgactcaataattgaaaaactagaattta 9840263  T

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Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 18882882 - 18882732
Alignment:
Q  11 cacagaaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgc 110  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18882882 cacaaaaggaataaacaacatagaagaaaaactaaaccggatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttacgcctcccgtcgc 18882783  T
Q  111 aattctccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  18882782 aattctcgaaaacgtgatgtgcttgctgctccctgttgtgtgattaaacgt 18882732  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 10107246 - 10107315
Alignment:
Q  195 tatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacacacagaagccca 266  Q
    |||||||||| |||| |||||||||||||  ||||||||||||||  || |||||||||||| |||||||||    
T  10107246 tatgccaataagtaaagaaacctaattct-tcatttgtttctttc-cgttagtaacaacacatagaagccca 10107315  T

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Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 19689219 - 19689069
Alignment:
Q  11 cacagaaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgc 110  Q
    |||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||     
T  19689219 cacaaaaggaataaacaacatagaagaaaaactaaactggatggtgaatgcttcactcaaagattcatcctctttattttgttgttgcgcctcccgtcgt 19689120  T
Q  111 aattctccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19689119 aattctccaaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 19689069  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 19678798 - 19678713
Alignment:
Q  76 catcctctttatgttgttgttgcgcctcccgtcgcaattctccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19678798 catcctctttatgttgttgttgcgcctcccgtcgcaattctccaaaacgtgatgtgcttgctgctccctgttgtgtgataaaacgt 19678713  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 293 - 427
Target Start/End: Complemental strand, 36356485 - 36356353
Alignment:
Q  293 ctcatgtttcttcttagcctcttctttatagtcaacaatcaaagaatatcatgtctagctcttgtttgatcatgtggctagtaataatagtgatcataca 392  Q
    |||||||||||||||||||||||  |  ||| ||||| ||||||||||||||| || ||||||||||||||||||||| |  ||||||||| || |||||    
T  36356485 ctcatgtttcttcttagcctctt--tactagccaacattcaaagaatatcatgccttgctcttgtttgatcatgtggccaacaataatagtaataataca 36356388  T
Q  393 cataattgactcaataaatgaaaaagtataattta 427  Q
     |||||||| ||||||||||||||| ||| |||||    
T  36356387 tataattgattcaataaatgaaaaactatgattta 36356353  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 19685836 - 19685763
Alignment:
Q  11 cacagaaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctt 84  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  19685836 cacaaaaggaataaacaacatagaagaaaaactaaaccggatggtgaatgcttcactcaaaggctcatcctctt 19685763  T

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Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 587036 - 586891
Alignment:
Q  16 aaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgcaattc 115  Q
    |||||||||||||| |||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  587036 aaggaataaacaacttagaagaaaaactaaaccggatagtgaatgcttccctcaaaggttcatcctctttatgttgttgttgtgcctcccgtcgcaattc 586937  T
Q  116 tccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  586936 tccaaaacgtgatgtgcttgctgctccttgttgtgtgataaaacgt 586891  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 626886 - 627031
Alignment:
Q  16 aaggaataaacaacatagaagaaaaacaaaacccgatggtgaatgcttcactcaaaggttcatcctctttatgttgttgttgcgcctcccgtcgcaattc 115  Q
    |||||||||||||| |||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  626886 aaggaataaacaacttagaagaaaaactaaaccggattgtgaatgcttctctcaaaggttcatcctctttatgttgttgttgtgcctcccgtcgcaattc 626985  T
Q  116 tccaaaacgtgatgtacttgctgctccctgttgtgtgataaaacgt 161  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  626986 tccaaaacgtgatgtgcttgctgctccttgttgtgtgataaaacgt 627031  T

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Target: scaffold0214 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 13055 - 12980
Alignment:
Q  181 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13055 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 12980  T

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Target: scaffold0214; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 17129 - 17054
Alignment:
Q  181 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17129 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 17054  T

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Target: scaffold0214; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 19513 - 19438
Alignment:
Q  181 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  19513 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 19438  T

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Target: scaffold0214; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 27071 - 26996
Alignment:
Q  181 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  27071 gcttcttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 26996  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 23467757 - 23467828
Alignment:
Q  185 cttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23467757 cttatatttatatgccaataggtaacgatacctaattctcccatttgtttctttcgggttagtaacaacaca 23467828  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 4577298 - 4577223
Alignment:
Q  181 gcttcttatatttttatgccaataggtaacgaaacctaattctcccatttgtttctttcgggtcagtaacaacaca 256  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  4577298 gcttcttatatttatatgccaataggtaacgatccctaattctcccatttgtttctttcgggttagtaacaacaca 4577223  T

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