View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18079_low_6 (Length: 395)

Name: NF18079_low_6
Description: NF18079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18079_low_6
NF18079_low_6
[»] chr3 (7 HSPs)
chr3 (7-360)||(43979006-43979357)
chr3 (33-245)||(1027374-1027585)
chr3 (33-166)||(16870579-16870712)
chr3 (33-168)||(16870376-16870510)
chr3 (50-186)||(3371995-3372131)
chr3 (118-192)||(16870233-16870307)
chr3 (34-93)||(16870173-16870232)
[»] chr1 (2 HSPs)
chr1 (33-359)||(6139186-6139511)
chr1 (33-150)||(52021699-52021816)
[»] chr6 (2 HSPs)
chr6 (33-359)||(14764259-14764584)
chr6 (33-231)||(20726274-20726472)
[»] chr4 (1 HSPs)
chr4 (34-359)||(31326585-31326909)
[»] chr2 (1 HSPs)
chr2 (33-357)||(33301441-33301764)
[»] chr8 (1 HSPs)
chr8 (33-346)||(392663-392976)
[»] chr5 (2 HSPs)
chr5 (35-359)||(35428756-35429074)
chr5 (37-121)||(41340641-41340725)
[»] chr7 (3 HSPs)
chr7 (34-245)||(5439193-5439405)
chr7 (34-245)||(5448203-5448415)
chr7 (33-196)||(1813853-1814013)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 43979006 - 43979357
Alignment:
Q  7 ggacatcatcactcacacttgatttcccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaatacc 106  Q
    |||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  43979006 ggacataatcactcacatttgatttcccaaccaacgcccgtgcgttgttctgaatttgctagtaataacttgcccttttgcatggtatagcggaaatacc 43979105  T
Q  107 ataaggacacgctttatcttctagataagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||| |||||||||    
T  43979106 ataaggacacgctttatcttctagataagatcaccatcatctcctagaacaagggagacattgctagcacctgcctcaaagtctttttcagataatgctc 43979205  T
Q  207 cacctgaacaatttctctttaaatggccagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagcta 306  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43979206 cacctggacaatttctctttaaatgg-tagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccac-ttatagcta 43979303  T
Q  307 gcaacatcgagcttgatgaagtgatttcatcacttttcatcctcctttcttcaa 360  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  43979304 gcaacatcgagcttgatgaagtgctttcatcactttgcatcctcctttcttcaa 43979357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 1027585 - 1027374
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||||| |||  ||||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  1027585 ccaaccaatgcctgtgttttgttctgaatcatctagcaataacttgtccttttgcatggtaaagcggaaataccataaggacacactttatcttccagat 1027486  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    |||||||||||||||||| | ||| ||||||| | | ||||||||||||| ||| |||||||||  || | ||||||||  ||||||||||||| ||| |    
T  1027485 aagatcaccatcatctcccaaaactagggagaaaatgctagcacttgccttagagtctttttcaggtacttctccacctagacaatttctctttgaat-g 1027387  T
Q  233 ccagacattccac 245  Q
     ||||||||||||    
T  1027386 acagacattccac 1027374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 16870579 - 16870712
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    ||||| |||||||||| |||||||||| || ||||||||||||||| ||||||| |||||||| || |||||||||||||| || |||||||||||||||    
T  16870579 ccaactaatgcccgtgtgttgttctgattccgctagcaataacttgtccttttgtatggtatatcgaaaataccataaggagacactttatcttctagat 16870678  T
Q  133 aagatcaccatcatctcctagaacaagggagaca 166  Q
    |||||||||||||||||| | |||||||||||||    
T  16870679 aagatcaccatcatctcccaaaacaagggagaca 16870712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 16870376 - 16870510
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||| |||||||| || |||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  16870376 ccaatcaatgcccctgtgttgttctcaatcctctagcaataacttgtccttttgcatggtatagcggaaataccataagga-gcactttatcttttagat 16870474  T
Q  133 aagatcaccatcatctcctagaacaagggagacatt 168  Q
    |||||||||||||||||| | |||||||||||||||    
T  16870475 aagatcaccatcatctccaaaaacaagggagacatt 16870510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 3372131 - 3371995
Alignment:
Q  50 gttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagataagatcaccatcatctc 149  Q
    |||||||| |||| ||||  ||||||||| | ||||||||||| |||||||||||||| |||||||  |||| |||||||||||||||||||||| ||||    
T  3372131 gttgttctaaatccgctattaataacttgtcattttgcatggtgtagcggaaataccaaaaggacaaactttctcttctagataagatcaccatcctctc 3372032  T
Q  150 ctagaacaagggagacatttctagcacttgcctcaga 186  Q
    | | | |||| ||||| || |||||||||||||||||    
T  3372031 ccaaagcaagagagacgttgctagcacttgcctcaga 3371995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 16870233 - 16870307
Alignment:
Q  118 ctttatcttctagataagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattcttt 192  Q
    |||||| |||||||||||||||| ||||||||| | ||||| ||||||||| | ||||||||||||||| |||||    
T  16870233 ctttattttctagataagatcacaatcatctcccaaaacaaaggagacattgccagcacttgcctcagagtcttt 16870307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 16870173 - 16870232
Alignment:
Q  34 caaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggta 93  Q
    |||| |||||||||| |||||| |||||| ||||||||||||||| ||||||||| ||||    
T  16870173 caactaatgcccgtgtgttgttttgaatccgctagcaataacttgtccttttgcacggta 16870232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 359
Target Start/End: Complemental strand, 6139511 - 6139186
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    ||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6139511 ccaaccaatgcccatgtgttgttctgaatccgctagcaattacttgtccttttgcatggtatagcggaaataccataaggacacacttaatcttctagat 6139412  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    ||||||| |||||||||| | ||||||||||||||| ||||||||| ||||||| ||||||||| | | | ||||||||| ||||||||||||||||||     
T  6139411 aagatcatcatcatctcccaaaacaagggagacattgctagcacttacctcagagtctttttcataaactactccacctggacaatttctctttaaatgc 6139312  T
Q  233 ccagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgatt 332  Q
    |||||| ||||||  ||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||  | |||||| |||| |||||||||| ||    
T  6139311 ccagactttccacatttccaacacgaaaaatcctttgcatggatcttcttcccattagccccac-ttctagtcaacaacattgagcctgatgaagtgctt 6139213  T
Q  333 tcatcacttttcatcctcctttcttca 359  Q
    |||||||||||||||||||||| ||||    
T  6139212 tcatcacttttcatcctcctttattca 6139186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 52021816 - 52021699
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52021816 ccaaccaattctcgtgcgttgttctgaatccgctagcaataacttgcccttttgcatggtatagcggaaataccataaggactcgctttatcttctagat 52021717  T
Q  133 aagatcaccatcatctcc 150  Q
    || |||||||||||||||    
T  52021716 aatatcaccatcatctcc 52021699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 33 - 359
Target Start/End: Original strand, 14764259 - 14764584
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||||||||| |||||| |||||||| ||||||  ||||| ||||||||||||||||||||||||||||||  |||||  || |||||||||||    
T  14764259 ccaaccaatgcccgtgtgttgttttgaatctgttagcaagcacttgtccttttgcatggtatagcggaaataccatagagacacatttgatcttctagat 14764358  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    || ||||||||||||||| ||||||||   |||||| |||||| |||||||| | ||||||||| | | ||||||||||  ||||||||||||||||||     
T  14764359 aaaatcaccatcatctcccagaacaagattgacattgctagcatttgcctcaaagtctttttcagaaactgctccacctagacaatttctctttaaatgc 14764458  T
Q  233 ccagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgatt 332  Q
    ||||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||| || |||||| || |||||||||||| ||    
T  14764459 ccagacattccacacttccaacacggcatattatttgcatggatcttcttcccattagccccac-ttctagttaacaacattgaccttgatgaagtgctt 14764557  T
Q  333 tcatcacttttcatcctcctttcttca 359  Q
    |||||||||||||||||||||||||||    
T  14764558 tcatcacttttcatcctcctttcttca 14764584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 20726472 - 20726274
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    ||||| ||| |||||| ||| ||||||||| |||||||||| |||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  20726472 ccaactaattcccgtgtgttattctgaatccgctagcaataccttgtccttttgcttggtatagtggaaataccataaggacacactttatcttctagat 20726373  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatg 231  Q
    |||||||  ||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| | | ||||||||||||||||||| ||||||||||    
T  20726372 aagatcatgatcatctcccaaaacaagggagacattgctagcacttgcctcagagtctttttcagagactgctccacctgaacaatttatctttaaatg 20726274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 34 - 359
Target Start/End: Complemental strand, 31326909 - 31326585
Alignment:
Q  34 caaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagata 133  Q
    ||||||||||| ||| |||||| |||||| | ||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  31326909 caaccaatgcctgtgtgttgttttgaatccgttagcaataacttgtccttttgcatggtataacggaaataccataaagacacactttatcttctagata 31326810  T
Q  134 agatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatggc 233  Q
    ||||||| ||||||| | | |||||||||||  || |||||||||  || ||| ||||||||| ||| ||||||||||||||||||||||||||||||      
T  31326809 agatcacgatcatcttccaaaacaagggagatgttgctagcacttttcttagagtctttttcagatactgctccacctgaacaatttctctttaaatgct 31326710  T
Q  234 cagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgattt 333  Q
      |||||||||| |||||| |||| |||||||||||||  |||| ||||||||||||||||||||| ||| |||||||||  |||||||||||||| |||    
T  31326709 aggacattccacacttccaacacgccatattctttgcaccgatcctcttcccattagccccacttt-tagttagcaacattaagcttgatgaagtgcttt 31326611  T
Q  334 catcacttttcatcctcctttcttca 359  Q
    ||||||||||||||||||||||||||    
T  31326610 catcacttttcatcctcctttcttca 31326585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 357
Target Start/End: Original strand, 33301441 - 33301764
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||||| ||| ||||||| ||||| |||||||||||| || | ||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  33301441 ccaaccaatgcctgtgtgttgttcggaatccgctagcaataacctgtctttttgcatggtatagcgaaaataccataaggacacactttatcttctagat 33301540  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    ||||||||||| |||||| | |||||||||||| || |||||| |||||||| | |||||||   ||| ||||||| ||  ||||||||||||||||||     
T  33301541 aagatcaccataatctccgaaaacaagggagacgttgctagcatttgcctcatagtctttttttgatactgctccatctagacaatttctctttaaatgc 33301640  T
Q  233 ccagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgatt 332  Q
     |||| ||||||| |||||| || |  ||||||||||||||| ||||||||||||||||||||| |||||| || |||||| ||||||||||||||| ||    
T  33301641 tcagatattccacacttccaacatggtatattctttgcatgggtcttcttcccattagccccac-ttctagttaacaacattgagcttgatgaagtggtt 33301739  T
Q  333 tcatcacttttcatcctcctttctt 357  Q
    ||||||||||||||||| |||||||    
T  33301740 tcatcacttttcatccttctttctt 33301764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 392663 - 392976
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||| || ||| |||||||||||    
T  392663 ccaaccaatgtccgtgtgttgttctgaatccgctagcaattacttgtccttttgcatggtatagcggaaataccatacggagacacttaatcttctagat 392762  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    ||||||| |||||||||| |  |||||||||||||| ||||||||||||| ||| ||||||| | | | || |||||||| ||||||||||||||||||     
T  392763 aagatcatcatcatctcccaatacaagggagacattgctagcacttgccttagagtcttttttagaaattgttccacctggacaatttctctttaaatgt 392862  T
Q  233 ccagacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgatt 332  Q
    ||| | ||||||| |||| | ||| ||||||||||||||| ||||||||| | ||||||||||| |||||| || |||||| ||||||||||||||| ||    
T  392863 ccaaagattccacacttctaacacaacatattctttgcattgatcttctttctattagccccac-ttctagttaacaacattgagcttgatgaagtgctt 392961  T
Q  333 tc-atcacttttcat 346  Q
    || ||||||||||||    
T  392962 tctatcacttttcat 392976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 35 - 359
Target Start/End: Original strand, 35428756 - 35429074
Alignment:
Q  35 aaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagataa 134  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||| |||||| ||||||| | |||||||||||||||||||| ||| |||||||||||||    
T  35428756 aaccaatgctcgtgtgttgttctaaatccgctagcaataacttgtcctttt-catggtacaacggaaataccataaggacacacttaatcttctagataa 35428854  T
Q  135 gatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatggcc 234  Q
    ||||| ||| |||||| | ||||||||||||||| |||||||||  |||||| ||||||||| | | |||||||| || |||||||||||||||||| ||    
T  35428855 gatcatcatgatctccca-aacaagggagacattgctagcacttagctcagagtctttttcagaaactgctccacttggacaatttctctttaaatgccc 35428953  T
Q  235 agacattccacgcttccagcacgacatattctttgcatggatcttcttcccattagccccactttctagctagcaacatcgagcttgatgaagtgatttc 334  Q
    |||| |||||| |||||| ||||| | || ||||||||||||||||||||||||||| |||| |||||  || |||||| |||||||||   ||| ||||    
T  35428954 agactttccacacttccaacacgaaaaatcctttgcatggatcttcttcccattagctccac-ttctaattaacaacattgagcttgat---gtgctttc 35429049  T
Q  335 atcacttttcatcctcctttcttca 359  Q
    ||||||||||||| || ||||||||    
T  35429050 atcacttttcatcgtcatttcttca 35429074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 41340725 - 41340641
Alignment:
Q  37 ccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgcttt 121  Q
    |||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  41340725 ccaatgcccgtgtgttgttctgaatccactagcaataacttgtccttttgcatggtatagcggaaatactataaggacacacttt 41340641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 5439193 - 5439405
Alignment:
Q  34 caaccaatgcccgtgcgttgttctgaatctgctagcaataacttgc-ccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||   ||||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  5439193 caaccaatgcccgtgcattgttttgaatccgctagcaataactttttccttttgcatggtatagtggaaataccataaggacaaactttatcttctagat 5439292  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||| ||| || ||||||||| | | |||||||| || ||||||||||||| ||||     
T  5439293 aagatcaccatcatctcccaaaacaagggagacattgctagcacttgactcggagtctttttcataaactgctccacgtggacaatttctctttgaatgc 5439392  T
Q  233 ccagacattccac 245  Q
    | |||||||||||    
T  5439393 ctagacattccac 5439405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 5448203 - 5448415
Alignment:
Q  34 caaccaatgcccgtgcgttgttctgaatctgctagcaataactt-gcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||| |||| |||||| |||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  5448203 caaccaatgctcgtgtgttgttttgaatccgctagcaataactttgtccttttgcatggtatagtggaaataccataaggacaaactttatcttctagat 5448302  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttcaaataatgctccacctgaacaatttctctttaaatgg 232  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||| ||| || ||||||||| | | |||||||| || ||||||||||||| ||||     
T  5448303 aagatcaccatcatctcccaaaacaagggagacattgctagcacttgactcggagtctttttcataaactgctccacgtggacaatttctctttgaatgc 5448402  T
Q  233 ccagacattccac 245  Q
    | |||||||||||    
T  5448403 ctagacattccac 5448415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 1813853 - 1814013
Alignment:
Q  33 ccaaccaatgcccgtgcgttgttctgaatctgctagcaataacttgcccttttgcatggtatagcggaaataccataaggacacgctttatcttctagat 132  Q
    |||||||||||| ||| |||||||| ||||  |||| ||||||  | ||||||||||||||||| |||||  |||||||||||| |||||| ||||||||    
T  1813853 ccaaccaatgcctgtgtgttgttctaaatcgactagtaataaccagtccttttgcatggtatagaggaaactccataaggacacactttattttctagat 1813952  T
Q  133 aagatcaccatcatctcctagaacaagggagacatttctagcacttgcctcagattctttttca 196  Q
    |||||    ||||||||| | ||||||||||||||| ||||||||||||||| | |||||||||    
T  1813953 aagat---tatcatctcccaaaacaagggagacattgctagcacttgcctcaaagtctttttca 1814013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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