View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1807R-Insertion-1 (Length: 1155)
Name: NF1807R-Insertion-1
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 14 - 583
Target Start/End: Complemental strand, 23225572 - 23225007
Alignment:
| Q |
14 |
atcctgtcaagagaaatttctaatatgtgaccaattgaatctgtaaccaaaagtgtgccaccttcctttcttttatttgttttccttaaattgttatgtg |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23225572 |
atcctgtcaagagaaatttctaatatgtgaccaattgaatctgtaaccaaaagtgtgccaccttcctttcttttatttgttttccttgaattgttatgtg |
23225473 |
T |
|
| Q |
114 |
aagtacgactcaattgttcagtattttaattagcagaatcattgtcctggtgttaaatttagatagcgaactttgtctttaattatctctcaatcgtatc |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23225472 |
aagtacgactcaattgttctgtattttaattagcagaatcattgtcctggtgttaattttagatagcgaactttgtctttaattatctctcaattgtatc |
23225373 |
T |
|
| Q |
214 |
tgctttgctgaattaatccatttgcttaatttaatttgtcgattttatttgcttgtgttttacttctaagaatatgatgtactgctgtttgaattgttta |
313 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23225372 |
tgctttgctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttacttctaagaatatgatgtactgctgtttgaattgttta |
23225273 |
T |
|
| Q |
314 |
atttgcttcttactaagcaaggaacggggaattgacttgacttgcataaaaaatcaatcctataaagtattgatagaagcttgagtataatggggtgcct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23225272 |
atttgcttcttactaagcaaggaacggggaattgacttgacttgcataaaaattcaatcctataaagtattgataggagcttgagtataatggggtgcct |
23225173 |
T |
|
| Q |
414 |
aagtttcgcatcgaacagtataggatattcggtgaaatatataggcggtttggttcttcctaagtgcctgagtgagtgtttatcaaatagtatcaaagtt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
23225172 |
aagtttcgcatcgaacagtataggatattcggtgaaatatataggcggtttggttcttcccaagtgcctg----agtgtttatcaaatggtatcaaagtt |
23225077 |
T |
|
| Q |
514 |
ggctgtcattacctaagaagcgttgcaaagtgaatctttcggacgatgttatgatcagaaacacatattg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23225076 |
ggctgtcattacctaagaagcgttgcaaagtgaatctttcggacgatgttatgatcagaaacacatattg |
23225007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 647 - 1061
Target Start/End: Complemental strand, 23224943 - 23224517
Alignment:
| Q |
647 |
gaagatatttttgtttttggtttcgttgttgttacaagtcatcgaagataacacccgagctgtgtgtgtatattggaatgagataagaaaacacagaaaa |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||| |
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|
| T |
23224943 |
gaagatatttttgtttttggtttcgttgttgttacaagtcatcgaagataacacttgagctgtgtgtatatatgggaatgggataagaaaacacagaaaa |
23224844 |
T |
|
| Q |
747 |
aacttggcttttttcatttgcccatcagccaccgcaatgtcatggccgctgcgcc-tttcaattcaagaagaaaaagacagaatcagcaatcttccagat |
845 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||| |
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|
| T |
23224843 |
aacttggcttttttcattttcccatcggccaccgcaatgtcatggccgctgcgccttttcaattcaagaagaagaagacaaaatcagcaattttccagat |
23224744 |
T |
|
| Q |
846 |
tcacttcttcatcacattctcttctttcttccaaccaaagacgcagctgtcacaagcattctctcagagagatggaaaccactctttctcgcac-accca |
944 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| || || |
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|
| T |
23224743 |
tcacttcttcatcacattctctcctgtcttcccaccaaagacacagccgtcacaagcattctctcagagagatggaaaccactctttctctcacaactca |
23224644 |
T |
|
| Q |
945 |
t-ctcagcttcgattgc-agcattttcgagacgctt---acttttcta--tttgtcga--cggccatga--cagcgagaaaacacta-ccatactcattc |
1032 |
Q |
| |
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| ||| ||||||||| | |||||||||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||| |||||||||||| |
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| T |
23224643 |
tcctctgcttcgattacaagcattttcgagacgctttaaccttttctaattttgtcgaacgggccatgatcaagcgagataacactacccatactcattc |
23224544 |
T |
|
| Q |
1033 |
cacattcaaatgtcacttacttctataaa |
1061 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |
|
|
| T |
23224543 |
caca-tcaaatgtcac-tacttctataaa |
23224517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 49855291 - 49855172
Alignment:
| Q |
62 |
aaaagtgtgccaccttcctttcttttatttgttttccttaaattgttatgtgaagtacgactcaattgttcagtattttaattagcagaatcattgtcct |
161 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||| ||||||||||||| | ||||||||||| | | | || |||||||||||||||| || |
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|
| T |
49855291 |
aaaagtgtgctaccttcccttgttttatttgttttccttgaattgttatgtgaggcacgactcaattttgc----tgtttgttagcagaatcattgtact |
49855196 |
T |
|
| Q |
162 |
ggtgttaaatttagatagcgaact |
185 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
49855195 |
ggtgttaattttagatagcgaact |
49855172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 819 - 931
Target Start/End: Original strand, 39558418 - 39558530
Alignment:
| Q |
819 |
aaagacagaatcagcaatcttccagattcacttcttcatcacattctcttctttcttccaaccaaagacgcagctgtcacaagcattctctcagagagat |
918 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||| || |||| |||||||| ||||||||||| || | ||||| ||| |||||| |||| | |
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|
| T |
39558418 |
aaagacagaatcagtgatcttccggacgcacttcttcatcaaatcctctcttttcttcctaccaaagacgctgcggccacaaccatcctctcaaagaggt |
39558517 |
T |
|
| Q |
919 |
ggaaaccactctt |
931 |
Q |
| |
|
|||| |||||||| |
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|
| T |
39558518 |
ggaagccactctt |
39558530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 801 - 877
Target Start/End: Complemental strand, 49857981 - 49857905
Alignment:
| Q |
801 |
ctttcaattcaagaagaaaaagacagaatcagcaatcttccagattcacttcttcatcacattctcttctttcttcc |
877 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||| |||||| ||||||| ||||||| ||||||||| |
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|
| T |
49857981 |
ctttcaattccagaagaagaagacagaatcagtgcgcttccagactcacttgttcatcatattctctcctttcttcc |
49857905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 805 - 909
Target Start/End: Complemental strand, 49972025 - 49971921
Alignment:
| Q |
805 |
caattcaagaagaaaaagacagaatcagcaatcttccagattcacttcttcatcacattctcttctttcttccaaccaaagacgcagctgtcacaagcat |
904 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| | |||||||| |||||| | || || ||||||| ||| |
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|
| T |
49972025 |
caattcaagaagaagaagacagaatcagtgctctcccagattcacttcttattcacattctttcttttcttcctaccaaaaatgccgccgtcacaatcat |
49971926 |
T |
|
| Q |
905 |
tctct |
909 |
Q |
| |
|
|||| |
|
|
| T |
49971925 |
cctct |
49971921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 819 - 931
Target Start/End: Original strand, 50814020 - 50814132
Alignment:
| Q |
819 |
aaagacagaatcagcaatcttccagattcacttcttcatcacattctcttctttcttccaaccaaagacgcagctgtcacaagcattctctcagagagat |
918 |
Q |
| |
|
|||||||||||||| |||| || || ||||||||||| | ||||| | || ||||| || ||||||||||| | ||||| |||||||||| |||| | |
|
|
| T |
50814020 |
aaagacagaatcagtgatctgccggacacacttcttcatgaaattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggt |
50814119 |
T |
|
| Q |
919 |
ggaaaccactctt |
931 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
50814120 |
ggaatccactctt |
50814132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 819 - 931
Target Start/End: Complemental strand, 50861844 - 50861732
Alignment:
| Q |
819 |
aaagacagaatcagcaatcttccagattcacttcttcatcacattctcttctttcttccaaccaaagacgcagctgtcacaagcattctctcagagagat |
918 |
Q |
| |
|
|||||||||||||| |||| || || ||||||||||| | ||||| | || ||||| || ||||||||||| | ||||| |||||||||| |||| | |
|
|
| T |
50861844 |
aaagacagaatcagtgatctgccggacacacttcttcatgaaattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggt |
50861745 |
T |
|
| Q |
919 |
ggaaaccactctt |
931 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
50861744 |
ggaatccactctt |
50861732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 23217706 - 23217675
Alignment:
| Q |
171 |
tttagatagcgaactttgtctttaattatctc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23217706 |
tttagatagcgaactttgtctttaattatctc |
23217675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 49855121 - 49855064
Alignment:
| Q |
212 |
tctgctttgctgaattaatccatttgcttaatttaatttgtcgattttatttgcttgtgtttt |
274 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
49855121 |
tctgctttactgaattaattcatttgcttacttt-----gtcgattttatttgcttgtgtttt |
49855064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 926
Target Start/End: Complemental strand, 53341105 - 53341036
Alignment:
| Q |
857 |
tcacattctcttctttcttccaaccaaagacgcagctgtcacaagcattctctcagagagatggaaacca |
926 |
Q |
| |
|
||||||||||| |||||| |||||||||||| | | | ||||||||| |||||| |||| ||||||||| |
|
|
| T |
53341105 |
tcacattctctcctttctcccaaccaaagacaccgtcgccacaagcatcctctcaaagaggtggaaacca |
53341036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 19369358 - 19369301
Alignment:
| Q |
221 |
ctgaattaatccatttgcttaatttaatttgtcgattttatttgcttgtgttttactt |
278 |
Q |
| |
|
|||||||||| |||| |||||||||||| || | ||||||| || ||||||||||||| |
|
|
| T |
19369358 |
ctgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttactt |
19369301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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