View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-12 (Length: 565)
Name: NF1807R-Insertion-12
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 26577558 - 26577271
Alignment:
| Q |
9 |
gtttcagcgtttgtttgtgttgagtgtagatccttctgtggctgatatgcggagggtgggttgggaggttaacggggtgggttgtgcagtataacataaa |
108 |
Q |
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| T |
26577558 |
gtttcaacgtttgtttgtgttgagtgtagatccttctgtggctgatatgtggagggtgggttgggaggttaacggggtgggttgtgcggtataatataaa |
26577459 |
T |
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| Q |
109 |
tgacaaatggatttggaaacatgatcgtatagaatggtatttggtnnnnnnntatctgtcgacatattcttacaactactgatgaacttcctaatgacat |
208 |
Q |
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| T |
26577458 |
tgacaaatggatttggaaacatgatcgtatagaaggatattcgataaaaaa-tgtctgtc---atattcttacaactactgatgaacttcctaatgacat |
26577363 |
T |
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| Q |
209 |
tcactaagatgtcaattggagtaaatttgtaccactcatggtgtcctacaaaggacaatttaaggcgtagatgagtgtttctagccaatttt |
300 |
Q |
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| T |
26577362 |
tcactaagaggtcaattggagtaaatttgtaccactcatggtgtcctacaaaggacaatttaaggcgtagatgactgtttctagccaatttt |
26577271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 304 - 565
Target Start/End: Original strand, 17906347 - 17906631
Alignment:
| Q |
304 |
ggtggcattttacatgtgtaaccttaaagctttcccttcatgggaaagttgtgttt-----------ataataatataaatattcaatggttcagatctt |
392 |
Q |
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| T |
17906347 |
ggtggcatttcacatgggtaaccttaaagctttcccttcatgggaaagttgtgttttgactatagatataataatataaatattcaatggttcagatctt |
17906446 |
T |
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| Q |
393 |
ttacctgtaacctttactttactttttggttctacaaaattttcaaaaatttggaccccactttgtcttag--------------tttaatgggctaacg |
478 |
Q |
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| T |
17906447 |
ttacatgtaacctttactttactttttgattctacaaaattttcaaaaatttggacctcaccttgtcttagtttaatgtaaattatttaatgggctaaca |
17906546 |
T |
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| Q |
479 |
gcttatatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagt |
565 |
Q |
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| T |
17906547 |
gct--tatatacttatggacctatttgattggatacaaattttatgaagtccgaatgaaaacggtatattaacaccctcttagaagt |
17906631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 130
Target Start/End: Complemental strand, 556565 - 556534
Alignment:
| Q |
99 |
ataacataaatgacaaatggatttggaaacat |
130 |
Q |
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| T |
556565 |
ataacataaatgacaaatggatttggaaacat |
556534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 304 - 565
Target Start/End: Complemental strand, 16373703 - 16373420
Alignment:
| Q |
304 |
ggtggcattttacatgtgtaaccttaaagctttcccttcatgggaaagttgtgttt-----------ataataatataaatattcaatggttcagatctt |
392 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| |
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| T |
16373703 |
ggtggcatttcacatgggtaaccttaaagctttctcttcatgggaaagttatcttttgaccatagatataataatataaatatttaatggttcagatctt |
16373604 |
T |
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| Q |
393 |
ttacctgtaacctttactttactttttggttctacaaaattttcaaaaatttggaccccactttgtcttagttt--------------aatgggctaacg |
478 |
Q |
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| T |
16373603 |
ttacctgtaaccttaactttattttttggttctacaaaattttcaaaaatttggaccccaccttatcttagtttaatgtaaattatttaatgggctaaca |
16373504 |
T |
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| Q |
479 |
gcttatatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatattaacacccccttagaagt |
565 |
Q |
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| T |
16373503 |
gct--tatatagttatggacctatttgattggatacaaactttatgaagtccgaatgaaaac-gtatattaacacccccttaaaagt |
16373420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 364 - 565
Target Start/End: Original strand, 12641133 - 12641346
Alignment:
| Q |
364 |
taatataaatattcaatggttcagatcttttacctgtaacctttactttactttttggttctacaaaattttcaaaaatttggaccccactttgtcttag |
463 |
Q |
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| T |
12641133 |
taatataaatattcaatggttcagatcttttacctgtaacctttactttactttttggttctacaaaattttcaaaaatttggaccccaccttgtcttag |
12641232 |
T |
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| Q |
464 |
--------------tttaatgggctaacggcttatatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggtatatta |
549 |
Q |
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| T |
12641233 |
tttaatgtaaattatttaatggactaagagct--tatatagttatggacctatttgattgaatacaaattttatgaagtccgaatgaaaacggtatatta |
12641330 |
T |
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| Q |
550 |
acacccccttagaagt |
565 |
Q |
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||| |||||||||||| |
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| T |
12641331 |
acatccccttagaagt |
12641346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 359 - 558
Target Start/End: Complemental strand, 51894159 - 51893948
Alignment:
| Q |
359 |
tataataatataaatattcaatggttcagatcttttacctgtaacctttactttactttttggttctacaaaattttcaaaaatttggaccccactttgt |
458 |
Q |
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| T |
51894159 |
tataataatataaatattcaatggttgagatcttttacttgtaacatttactttactttttggttctacaaaatttttaaaaaatcggaccccaacttgt |
51894060 |
T |
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| Q |
459 |
cttagtt--------------taatgggctaacggcttatatatagttatggacctatttgattggatacaaactttatgaagtccgaataaaaacggta |
544 |
Q |
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| T |
51894059 |
cttagtttaatataaattatttaatgggccaacaact--tatatagttatgggcctatttgattggaaacaaattttatgaagcccgaatgaaaacaata |
51893962 |
T |
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| Q |
545 |
tattaacaccccct |
558 |
Q |
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| T |
51893961 |
tattaacatcccct |
51893948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 12640739 - 12640795
Alignment:
| Q |
303 |
tggtggcattttacatgtgtaaccttaaagctttcccttcatgggaaagttgtgttt |
359 |
Q |
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| T |
12640739 |
tggtggcatttcacatgggtaaccttaaagctttcccttcatgggaaagttgtgttt |
12640795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 20457387 - 20457426
Alignment:
| Q |
93 |
tgcagtataacataaatgacaaatggatttggaaacatga |
132 |
Q |
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| T |
20457387 |
tgcaggataacataagtgacaaatggatttggaaacatga |
20457426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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