View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807R-Insertion-13 (Length: 520)

Name: NF1807R-Insertion-13
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807R-Insertion-13
NF1807R-Insertion-13
[»] chr1 (14 HSPs)
chr1 (9-520)||(13085591-13086092)
chr1 (13-136)||(13271444-13271567)
chr1 (13-186)||(12964086-12964259)
chr1 (13-219)||(13081076-13081282)
chr1 (13-190)||(13244732-13244909)
chr1 (43-106)||(19279409-19279472)
chr1 (8-185)||(30368314-30368491)
chr1 (27-151)||(13094242-13094366)
chr1 (43-185)||(13070417-13070559)
chr1 (43-151)||(13129671-13129779)
chr1 (43-151)||(13161364-13161472)
chr1 (8-183)||(13100812-13100987)
chr1 (47-151)||(13010616-13010720)
chr1 (13-189)||(13065424-13065600)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 13086092 - 13085591
Alignment:
Q  9 cctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  13086092 cctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcatt 13085993  T
Q  109 ctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttgatataaacattatcagttttgtga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  13085992 ctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataaacattatcagttttttga 13085893  T
Q  209 agttaagaatgcttattgatatatgttcaatcattttattttccatttgtgtttaatgatgttcaaatagatggatatctttaatgtttatgataagtta 308  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||  |       |||||||| ||||||||||||||||    
T  13085892 agttaagaatgctcattgatatatgttcaatcattttattttccatttgtgtttaatgatattcattt-------tatctttagtgtttatgataagtta 13085800  T
Q  309 gtgttatccttggnnnnnnnataataccggtattcaatttggtttattttcggttaattctctatcttactacactttggatatataaaaagggttatgt 408  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  13085799 gtgttatccttggttcttttctaataccggtattcaatttggtttattttcggttaattctctatctacctacactttggatatataaaaagggttatgt 13085700  T
Q  409 attccatcttatattagataataatttattctagtctttattaagaaattcctaggaattctttatctttgtcaatttattacaaattctctatgtttct 508  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13085699 attccatcttatattag---ataatttattctagtctttattaagaaattcctaggaattctttatctttgtcaatttattacaaattctctatatttct 13085603  T
Q  509 atagttattaag 520  Q
    ||||||||||||    
T  13085602 atagttattaag 13085591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 13271567 - 13271444
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgt 112  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||| | || ||||||||||| |||||    
T  13271567 gaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgt 13271468  T
Q  113 aactccaagagtttctattgttct 136  Q
     ||||| || ||||| ||||||||    
T  13271467 tactcctagggtttcgattgttct 13271444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 12964086 - 12964259
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgt 112  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||| |||  | | || ||||||||||||||| |||| ||||||||||| | |||    
T  12964086 gaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgt 12964185  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttgat 186  Q
     |||||||| ||| |||| ||||| || ||| ||||||| || || |||||||| |||  |||||| |||||||    
T  12964186 tactccaagggttgctatggttcttcgtatgaaacatggtttgaaggtcaaagtcagtcaaagatgcatttgat 12964259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 13081076 - 13081282
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgt 112  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||||||||||  | ||||  |||||||||||  | || ||||||||||| ||  |    
T  13081076 gaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaat 13081175  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttgatataaacattatcagttttgtgaagtt 212  Q
    || ||| || ||||||||| | || |||||||||||||| || || |||||| || ||| |||||| ||||||||||| |||||  |||||| | |||||    
T  13081176 aattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataagcattacaagttttataaagtt 13081275  T
Q  213 aagaatg 219  Q
     ||||||    
T  13081276 cagaatg 13081282  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 13244732 - 13244909
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgt 112  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||||||||| || | ||||||||||||| |||| | || |||||||||||  ||||    
T  13244732 gaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgt 13244831  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttgatataa 190  Q
    ||| |  |||  |||||||||  | |||||| |||| || || || ||| |||| |||| |||||| |||||||||||    
T  13244832 aacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa 13244909  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 19279409 - 19279472
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtca 106  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||| | || |||||||||||    
T  19279409 ttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtca 19279472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 30368314 - 30368491
Alignment:
Q  8 acctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcat 107  Q
    |||| |||||||| | || |||||| ||||  | ||||||||||| ||||||||||||||  | |||||||||||||||||| | || |||||||||||     
T  30368314 acctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 30368413  T
Q  108 tctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttga 185  Q
     ||||||| || || | |||| |||| ||  | ||| ||||||| || || ||||| |||| || |||||| ||||||    
T  30368414 cctgtaacccctagggcttctgttgtcctttgaatgaaacatggcttgaacgtcaaggttactaaaagatgcatttga 30368491  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 13094366 - 13094242
Alignment:
Q  27 aaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgtaactccaagagttt 126  Q
    |||||||||||  |  |||||||||| ||||| ||||||||| | ||| |||||||||||||| | || |||||||||||  ||||||| |||||  |||    
T  13094366 aaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggcttt 13094267  T
Q  127 ctattgttctccgcatggaacatgg 151  Q
    || |  |||| |||||| |||||||    
T  13094266 ctgtgtttcttcgcatgaaacatgg 13094242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 13070417 - 13070559
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | |||  ||||||||||||| | || |||||||||||  ||||||| ||||   ||||  ||||||| | |||    
T  13070417 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttcatttgttcttcacat 13070516  T
Q  143 ggaacatggattcaaagtcaaagttagtagaagatgaatttga 185  Q
    | ||||||| ||||| || ||||| | || |||||| ||||||    
T  13070517 gaaacatggcttcaaggttaaagtcactaaaagatgcatttga 13070559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 13129779 - 13129671
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | |||  ||||||||||||| | || |||||||||||  ||||||| |||||  ||||| |  |||| |||||    
T  13129779 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttcttcgcat 13129680  T
Q  143 ggaacatgg 151  Q
    | |||||||    
T  13129679 gaaacatgg 13129671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 13161472 - 13161364
Alignment:
Q  43 ttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat 142  Q
    |||||||||| ||||| ||||||||| | ||| |||||||||||||| | || |||||||||||   |||||| |||||  ||||| |  |||| |||||    
T  13161472 ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaaggctttctgtgtttcttcgcat 13161373  T
Q  143 ggaacatgg 151  Q
    | |||||||    
T  13161372 gaaacatgg 13161364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 13100987 - 13100812
Alignment:
Q  8 acctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcat 107  Q
    |||| |||||||| | || || ||||||||| |  |||||||||| ||||| ||||||||| | |||  ||||||||||||| | || |||||||||||     
T  13100987 acctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcac 13100888  T
Q  108 tctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaattt 183  Q
     || |||| || |   ||||| ||||||| | |||| ||||||| || || |||||||| | || |||||| ||||    
T  13100887 cctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 13010720 - 13010616
Alignment:
Q  47 aatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaa 146  Q
    |||||| ||||| ||||||| | | |||||||| |||| |||| |||| |||||||||||| |  |||| |||| | |||||||| |||| |||||  ||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtcatgccataaccccaaaactttctattattcttcgcataaaa 13010621  T
Q  147 catgg 151  Q
    |||||    
T  13010620 catgg 13010616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 13065424 - 13065600
Alignment:
Q  13 gaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatattatggaagtttcacatataagttgtggaaggtcattctgt 112  Q
    |||||||| | || |||||||| | | | ||| ||||||| |||| ||| || |||||| |||||||||||  |||| |  | ||||| |||||| ||||    
T  13065424 gaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgt 13065523  T
Q  113 aactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtagaagatgaatttgatata 189  Q
    |||||||||  ||||||||   ||| | ||| ||||||| || || |||| ||| | || |||||| ||||||||||    
T  13065524 aactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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