View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-14 (Length: 463)
Name: NF1807R-Insertion-14
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-14 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 52471369 - 52471584
Alignment:
| Q |
9 |
ggtttttattcatcagatgttagaatgaatttataacgatcgatcagcaaaataataatataacagtctgaaatgaactaatacttttgttttcaaagaa |
108 |
Q |
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| T |
52471369 |
ggtttttattcatcagatgttagaatgaatttataacgatcgatcagcaaaataataatataacagtctgaaatgaactaatacttttgttttcaaagaa |
52471468 |
T |
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| Q |
109 |
tttatttaaagaatatagctgacgggctttcttgtattacaagttatgtttttcattttcatttattttaaaatttcagatgaagtagaacctttgtccc |
208 |
Q |
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| T |
52471469 |
tttatttaaagaatatagctgacgggctttcttgtattacaagttatgtttttcatattcatttattttaaaatttcagatgaagtagaaactttgtcac |
52471568 |
T |
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| Q |
209 |
ctggctctcatccaat |
224 |
Q |
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| T |
52471569 |
ctggctctcatccaat |
52471584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 300 - 463
Target Start/End: Original strand, 52471642 - 52471805
Alignment:
| Q |
300 |
gtggaaaaagtgaacttaaattaaactaatccaaaaacaatcatttccctcctcccattttagttcactttcaagccagagtatattattttctttgtct |
399 |
Q |
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| T |
52471642 |
gtggaaaaagtgaacttaaattaaactaatccaaacacaattatttccctcctcccattttagttcactttcaagccagagtatattattttctttgtct |
52471741 |
T |
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| Q |
400 |
ctatactctctattaaataaccaccactcctgtccacagcctagtggttttgtcttcttatcaa |
463 |
Q |
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| T |
52471742 |
ctatactctctattaaataaccaccactccagtccacagactagtggttttgtcttcttatcaa |
52471805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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