View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-15 (Length: 461)
Name: NF1807R-Insertion-15
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 40 - 461
Target Start/End: Complemental strand, 12874619 - 12874195
Alignment:
| Q |
40 |
caaactatatattataagatgctcatattctgttccccgacttccccaatgaactctcttggcctttctacacacttcatttcaccacctttatta---a |
136 |
Q |
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| T |
12874619 |
caaactatatattataagatgctcatattctgttccccgacttccccaatgaactctcttggcctttctacacacttcatttcaccacctttattattaa |
12874520 |
T |
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| Q |
137 |
ttaacatcttcctttgtcttatttctcattcactcacacatctttaatttattttctctcatatttcacttcacactctccttatctcctactacataaa |
236 |
Q |
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| T |
12874519 |
ttaacatcttcctttgtcttatttctcattcactcacacatctttaatttattttctctcatatttcacttcacactctccttatctcctactacataaa |
12874420 |
T |
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| Q |
237 |
ttgcattccacaaaatatttaccaccatcaacacaaacatgcatgtccttaacccttcaatgctatttgcacccccaaataccaaagaaaaacaatgtca |
336 |
Q |
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| T |
12874419 |
ttgcattccacaaaatatttaccaccatcaacacaaacatgcatatccttaacccttcaatgctatttgcacccccaaataccaaagaaaaacaatgtca |
12874320 |
T |
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| Q |
337 |
tgatacatcttttctaccatgtcaagttactaacataccctcagagttcatatggcctgagcatgaaaaaccatgtcttacaccaccaaaacttcaagtt |
436 |
Q |
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| T |
12874319 |
tgatacatcttttctaccatgtcaagttactaacataccctcagagttcatatggcctgagcatgaaaaaccatgtcttacaccaccaaaacttcaagtt |
12874220 |
T |
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| Q |
437 |
ccaccaattgacttaaaagcttttc |
461 |
Q |
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| T |
12874219 |
ccaccaattgacttaaaagcctttc |
12874195 |
T |
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