View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807R-Insertion-16 (Length: 256)

Name: NF1807R-Insertion-16
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807R-Insertion-16
NF1807R-Insertion-16
[»] chr6 (7 HSPs)
chr6 (153-256)||(26660731-26660834)
chr6 (153-256)||(26766702-26766805)
chr6 (166-256)||(27668902-27668987)
chr6 (8-119)||(26660868-26660982)
chr6 (8-119)||(26766839-26766953)
chr6 (169-256)||(26616743-26616824)
chr6 (169-256)||(26722671-26722752)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 26660834 - 26660731
Alignment:
Q  153 gaagttgttttgtggactccaaaatcaaacaagaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttc 252  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26660834 gaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttc 26660735  T
Q  253 atca 256  Q
    ||||    
T  26660734 atca 26660731  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 26766805 - 26766702
Alignment:
Q  153 gaagttgttttgtggactccaaaatcaaacaagaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttc 252  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26766805 gaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttc 26766706  T
Q  253 atca 256  Q
    ||||    
T  26766705 atca 26766702  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 27668902 - 27668987
Alignment:
Q  166 ggactccaaaatcaaacaagaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttcatca 256  Q
    |||||||||||||| ||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||| |||||||||    
T  27668902 ggactccaaaatcagacaagaataggaaatttaagaagcagaata-----atagtaataatagaaatgttagtatcctactatcttcatca 27668987  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 26660982 - 26660868
Alignment:
Q  8 aattgtaccaccactttcatttttgttgccctcgtatctcgttatttattaga---cttatannnnnnnnnnnnnactactataaatgcaatctttcttt 104  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||   ||||||             |||||||||||||||||||||||||    
T  26660982 aattgtaccaccacttttattttcattgccctcgtatctcgttatttattagacttcttatattttttcatttttactactataaatgcaatctttcttt 26660883  T
Q  105 gttacttcatgagag 119  Q
    |||||||||||||||    
T  26660882 gttacttcatgagag 26660868  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 26766953 - 26766839
Alignment:
Q  8 aattgtaccaccactttcatttttgttgccctcgtatctcgttatttattaga---cttatannnnnnnnnnnnnactactataaatgcaatctttcttt 104  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||   ||||||             |||||||||||||||||||||||||    
T  26766953 aattgtaccaccacttttattttcattgccctcgtatctcgttatttattagacttcttatattttttcatttttactactataaatgcaatctttcttt 26766854  T
Q  105 gttacttcatgagag 119  Q
    |||||||||||||||    
T  26766853 gttacttcatgagag 26766839  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 26616824 - 26616743
Alignment:
Q  169 ctccaaaatcaaacaagaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttcatca 256  Q
    ||||||||||| |||||||||||||| || | |||| |||||      |||||||| |||||||||||||||||||||||||||||||    
T  26616824 ctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagtatgctactttcttcatca 26616743  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 26722752 - 26722671
Alignment:
Q  169 ctccaaaatcaaacaagaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagtatgctactttcttcatca 256  Q
    ||||||||||| |||||||||||||| || | |||| |||||      |||||||| |||||||||||||||||||||||||||||||    
T  26722752 ctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagtatgctactttcttcatca 26722671  T

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