View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-18 (Length: 228)
Name: NF1807R-Insertion-18
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 31106131 - 31105915
Alignment:
| Q |
12 |
attatatcctttaacacagcctagtcaggtgcaaatgacattttctgtttcacaaatgttagttagataaaatgaatttgattttgcacggaaaagttgt |
111 |
Q |
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| T |
31106131 |
attatatcctttaacacagcctagttagatgcaaatgacattttctatttcacaaatgttagttagataaaatgagtttgattttgcacggaaaagttgt |
31106032 |
T |
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| Q |
112 |
aaactctctcaagacacacaactacccaagccccaagtacaatcaatagactagggatgttcggggcgaagaaaactcaatataactctatatttataac |
211 |
Q |
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| T |
31106031 |
aaactctctcaagacacacaactacccaagccccaagtacaaccagtagactagggatgttcggggtgaagaaaactcaatataactctatatttataac |
31105932 |
T |
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| Q |
212 |
aactttctagctatttt |
228 |
Q |
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| T |
31105931 |
aactttctagctatttt |
31105915 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 31107895 - 31107828
Alignment:
| Q |
11 |
tattatatcctttaacacagcctagtcaggtgcaaatgacattttctgtttcacaaatgttagttagataaa |
82 |
Q |
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| T |
31107895 |
tattatatcctttaacacagcctct----gtgcagatgacattttctattgcacaaatgttagttagataaa |
31107828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 3511677 - 3511763
Alignment:
| Q |
112 |
aaactctctcaagacacacaactacccaagccccaagtacaatcaatagactagggatgttcggggcgaagaaaactcaatataactct |
200 |
Q |
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| T |
3511677 |
aaactctctcaagacacacaactacccaatccccaa-tacacccaaaagactagagttgtt-gtggtgatgaaaactcaatataactct |
3511763 |
T |
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