View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-2 (Length: 1135)
Name: NF1807R-Insertion-2
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 570
Target Start/End: Complemental strand, 5452898 - 5452347
Alignment:
| Q |
14 |
cgtgcatgagtaatttggaaatactacatccaacaaagagtaagatatggctgcatacattaaacccaatgtggcagaggcaattcaggtaaggggacaa |
113 |
Q |
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| T |
5452898 |
cgtgcatgagtaatttggaaatactacatccaacaaagagtaagatatggctgcatacattaaacccaatgtggcagaggcaattcagctaaggggacaa |
5452799 |
T |
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| Q |
114 |
aatgtgatttagacagttaatgttttcttttccaatggcgttccccccattgagccaatcaattgacagtaattcactaagttaacttgagctaattgta |
213 |
Q |
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| T |
5452798 |
aatgtgacttagacagtta------tcttgcccaatggcgttccccc--ttgagccaatcaattgacagagcttcactaagttaacttgagctaattgta |
5452707 |
T |
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| Q |
214 |
gctgtttttgaaactataacataacttccctaacaaagccaggggacaaaacgtgaagctggcaataaattttttctgtataaatgactcattatattca |
313 |
Q |
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| T |
5452706 |
gctattcttgaaactataacataacttccctaacaaagctaggggacaaaacgtgaagctggcaataaattttgtctgtataaatgacccatgatattca |
5452607 |
T |
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| Q |
314 |
ttgggagtatatgacaaattaggtggccagatacataaaggaagcttacagtatttgctcttaaaaacatattatacttaaagaccccacaaccacatta |
413 |
Q |
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| T |
5452606 |
tttggagcatatgacaaattaggtggccagatacataaaggaagcttactgtatttgctcttaaaacagtattatacttgaagaccccacaaccacatta |
5452507 |
T |
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| Q |
414 |
gattttagagctgaacatttaacctgattgcaaaactaacaccaacttaaaaatagccatcaactaaattatagttagtat--atattaatggaggactt |
511 |
Q |
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| T |
5452506 |
gattttagagctgaatatttaaccttattgcacaattaacactaacttaaaaatagccattaactaaattatagttagtatatatattaacggcggactt |
5452407 |
T |
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| Q |
512 |
tggatatacattactcataaaaagtt-taaaggataaaataaatcaatttatattatata |
570 |
Q |
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| T |
5452406 |
tgggtatacattactcataaaaagttataaaggatcaaataaatcaatttatattatata |
5452347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 41392074 - 41392171
Alignment:
| Q |
38 |
tacatccaacaaagagtaagatatggctgcatacattaaacccaatgtggcagaggcaattcaggtaaggggacaaaatgtgatttagacagttaatg |
135 |
Q |
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| T |
41392074 |
tacatccaaccaaaagtaagatatggctgcatacattaaaccctatgtagcacaggctatttagcaaaggggacaaagtgtgatttatacagttaatg |
41392171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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