View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-3 (Length: 1100)
Name: NF1807R-Insertion-3
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 6085422 - 6085158
Alignment:
| Q |
9 |
tgttattcagaagatggaaggaagctgggatatgcgtctaagtggcatcacataaacacaacaaatttgaagtcggatcatgtttttgtctggtatgacc |
108 |
Q |
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| T |
6085422 |
tgttattcaaaagatcgaaagatggtgggatatgcgtctaagtggcatcacaaaaacaccacaagattgaattcagatcatatttttgtgtggtatgatc |
6085323 |
T |
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| Q |
109 |
cgtatcattctgacaacatattgggaagtgatgaaacaaatgtttcatttgaattctctgttaccgatgatacaagcggaacaagtt----atagcttta |
204 |
Q |
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| T |
6085322 |
cgtacatttctgacatcatatgggaaagtgatgaaacaaatgttacttttgaattctctgtttctactgtttc-agcggaaggagtttataacaacttta |
6085224 |
T |
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| Q |
205 |
tgacaatgacaatgaaagagtgtgggatctgcccagtttacttgtcagaaattcacatgcttttaa |
270 |
Q |
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| T |
6085223 |
tgacagtcacaatgaaagaatgtgggatctgcccaatttatttctcagaatttcaaatgcttttaa |
6085158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 6060279 - 6060204
Alignment:
| Q |
208 |
caatgacaatgaaagagtgtgggatctgcccagtttacttgtcagaaattcacatgcttttaacctcgctaaattt |
283 |
Q |
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| T |
6060279 |
caatgccaatgaaagagtgtgggatctgcccaatttatttgtcagaatttcatatgctttcaaccacactaaattt |
6060204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 6085079 - 6085028
Alignment:
| Q |
316 |
atgaagaggtatccagtttcattgaatcaagtgacacatgtggtggggagtc |
367 |
Q |
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| T |
6085079 |
atgaggaggtatgcagttacattgaatcaagtgacacatgtggtggggagtc |
6085028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 6060431 - 6060340
Alignment:
| Q |
47 |
taagtggcatcacataaacacaacaaatttgaagtcggatcatgtttttgtctggtatgacccgtatcattctgacaacatattgggaagtg |
138 |
Q |
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| T |
6060431 |
taagtggaatcataaaaacaccacaaaattgaaatcggatcatgtgtttgtgtggtatgatccatacctttctgacaccatattgagaagtg |
6060340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 904 - 950
Target Start/End: Complemental strand, 6051585 - 6051537
Alignment:
| Q |
904 |
tgagatggaaagcagtg--acattacatcaatagacatatatgatgaga |
950 |
Q |
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| T |
6051585 |
tgagatggaaggcagtgtgacattacatcaatagacatatatgatgaga |
6051537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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