View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807R-Insertion-4 (Length: 1060)

Name: NF1807R-Insertion-4
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807R-Insertion-4
NF1807R-Insertion-4
[»] chr2 (12 HSPs)
chr2 (8-270)||(32308737-32309013)
chr2 (737-887)||(32800957-32801107)
chr2 (537-665)||(32800796-32800924)
chr2 (8-97)||(32800053-32800142)
chr2 (547-665)||(5910374-5910492)
chr2 (683-887)||(5910138-5910329)
chr2 (11-65)||(32565833-32565887)
chr2 (15-97)||(32815463-32815544)
chr2 (15-95)||(32807025-32807097)
chr2 (310-398)||(32800431-32800521)
chr2 (882-976)||(32801144-32801236)
chr2 (185-270)||(32800254-32800339)
[»] chr5 (5 HSPs)
chr5 (683-887)||(31785552-31785751)
chr5 (537-665)||(31785796-31785926)
chr5 (882-976)||(31785423-31785515)
chr5 (305-399)||(31786235-31786331)
chr5 (186-247)||(31786843-31786902)
[»] chr6 (1 HSPs)
chr6 (185-260)||(300923-300998)
[»] chr4 (2 HSPs)
chr4 (283-334)||(11193507-11193558)
chr4 (300-334)||(23931781-23931815)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 32309013 - 32308737
Alignment:
Q  8 atatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgtatttgagattaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32309013 atatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggcatccttgtatttgagattaa 32308914  T
Q  108 tcttcttaatgggcaagtaatcttcttaacatatgcacctttattcttattattaaaattcaaacccacaatttttc---------------caatcaaa 192  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||               | ||||||    
T  32308913 tcttcttaacgggcaagtaatcttc-taacatatgcacctttattcgtattattaaaattcaaacccgcaatttttcatttatgaactcgatctatcaaa 32308815  T
Q  193 gtaataaattgatgggttatggaattactactgcgagttgtcaaatatgtttcgttgatagtatacaatagtgtttaa 270  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  32308814 ataataaattgatgggttatggaattactactgcgagttgtcaaatatgttttgttgatagtatacaatagtttttaa 32308737  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 737 - 887
Target Start/End: Original strand, 32800957 - 32801107
Alignment:
Q  737 gggattgtttgtgcctcgtcgggcgtctgaaaaagtgtttcctccttcggtaaacatttgtcgaaaaatcatgctaccaattaccaaacttaaatttatc 836  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800957 gggattgtttgttcctcgttgggcggctgaaaaagtgtttcctccttcggtaaacatttgtcgaaaaatcatgctaccaattaccaaacttaaatttatc 32801056  T
Q  837 taccaaatctttcagtttcttaagactttgtaactttgacctgtaggattt 887  Q
    |||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  32801057 taccaaatctttcagtttcttaagtctttgtaattttgacctgcaggattt 32801107  T

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Target: chr2; HSP #3
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 537 - 665
Target Start/End: Original strand, 32800796 - 32800924
Alignment:
Q  537 tttattaaatcaacctttgaatgatgtatgacacaatgccttaagtgataactggttttgcaatttagataggtatatatatttttaagcatttaaccat 636  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32800796 tttattagatcaacctttgaatgatgtatgacacaatgtcttaagtgataactggttttgcaatttagttaggtatatatatttttaagcatttaaccat 32800895  T
Q  637 ttatgcgtttgcagcaagagcaaaaagag 665  Q
    |||||||||||||||||||||||||||||    
T  32800896 ttatgcgtttgcagcaagagcaaaaagag 32800924  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 32800053 - 32800142
Alignment:
Q  8 atatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgtat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32800053 atatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcattagggtatccttgtat 32800142  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 547 - 665
Target Start/End: Complemental strand, 5910492 - 5910374
Alignment:
Q  547 caacctttgaatgatgtatgacacaatgccttaagtgataactggttttgcaatttagataggtatatatatttttaagcatttaaccatttatgcgttt 646  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||| ||| |||||||||    
T  5910492 caacctctgaatgctgtatgacacactgccttaagtgataactggttttgcaatttagataggtatatgcattttcaagcgtttaatcatgtatgcgttt 5910393  T
Q  647 gcagcaagagcaaaaagag 665  Q
    |||||||||||||||||||    
T  5910392 gcagcaagagcaaaaagag 5910374  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 683 - 887
Target Start/End: Complemental strand, 5910329 - 5910138
Alignment:
Q  683 aaactactgttgcatgaccttgactgctagtcaagtgacacaagcactcacggggggattgtttgtgcctcgtcgggcgtctgaaaaagtgtttcctcct 782  Q
    |||||||| ||||| ||||||||||||||||     |||||||||||||||||||| ||| | ||| ||||| |||||| ||||||||||||||||||||    
T  5910329 aaactacttttgcaagaccttgactgctagt-----gacacaagcactcacggggg-attctctgttcctcgccgggcggctgaaaaagtgtttcctcct 5910236  T
Q  783 tcggtaaacatttgtcgaaaaatcatgctaccaattaccaaacttaaatttatctaccaaatctttcagtttcttaagactttgtaactttgacctgtag 882  Q
    | ||||||||||| | ||||| ||||||||       |||||||||||| |||||||||| | | ||||||||| ||| ||| |||||| ||||||| ||    
T  5910235 ttggtaaacatttttggaaaagtcatgcta-------ccaaacttaaatctatctaccaagtatatcagtttctcaagtcttcgtaactgtgacctgcag 5910143  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 32565833 - 32565887
Alignment:
Q  11 tgaatggttagttagcatattgattgatactctttttatataggaaaggaactag 65  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32565833 tgaatggtttgttagcatattgattgatactttttttatataggaaaggaactag 32565887  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 32815463 - 32815544
Alignment:
Q  15 tggttagttagcatattgattgatactctttttatataggaaaggaactagc---taggaatggactcactagggtatccttgtat 97  Q
    ||||||||||||||||| ||    ||||| |||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  32815463 tggttagttagcatattaat----actctctttatataggaaaggaactaggaaataggaatggactcactagggtatccttgtat 32815544  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 32807025 - 32807097
Alignment:
Q  15 tggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgt 95  Q
    ||||||||||||||||||    ||||||||||||||||||||| |||    |||||||| |||||||||||||||||||||    
T  32807025 tggttagttagcatattg----atactctttttatataggaaatgaa----ctaggaattgactcactagggtatccttgt 32807097  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 32800431 - 32800521
Alignment:
Q  310 tttatcttatttatt-agtaacacttgcgtttttt-ctctccnnnnnnnataacaaaactgatgagttggcaagccacttgagataatctt 398  Q
    ||||||||||||||| |||||||||| | |||||| ||||||       || | |||||||||||||||||||||||||||||||||||||    
T  32800431 tttatcttatttatttagtaacacttacttttttttctctccattttttattaaaaaactgatgagttggcaagccacttgagataatctt 32800521  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 882 - 976
Target Start/End: Original strand, 32801144 - 32801236
Alignment:
Q  882 ggatttgcatggtaacgaaaagaaatttaggcatattcttctggaggtggagttac-atgctgaatttcactttaattgcaaaagtcggagttttc 976  Q
    |||||||||||||||| || ||||||||||||||| |||||| ||||| ||||||| | ||||||||||| |||||| ||||| || |||||||||    
T  32801144 ggatttgcatggtaacaaatagaaatttaggcata-tcttct-gaggt-gagttacaaagctgaatttcattttaatggcaaatgttggagttttc 32801236  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 32800254 - 32800339
Alignment:
Q  185 caatcaaagtaataaattgatgggttatggaattactactgcgagttgtcaaatatgtttcgttgatagtatacaatagtgtttaa 270  Q
    |||||||| ||||  ||||||||||||   |||||||||  ||| ||||||||||||||||||  ||||||||||| ||| |||||    
T  32800254 caatcaaaataatggattgatgggttactaaattactaccacgaattgtcaaatatgtttcgtcaatagtatacaaaagtttttaa 32800339  T

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Target: chr5 (Bit Score: 152; Significance: 6e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 683 - 887
Target Start/End: Complemental strand, 31785751 - 31785552
Alignment:
Q  683 aaactactgttgcatgaccttgactgctagtcaagtgacacaagcactcacggggggattgtttgtgcctcgtcgggcgtctgaaaaagtgtttcctcct 782  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  31785751 aaactacttttgcaagaccttgactgctagtcaagtgacacaagcactcacggggg-attgtttgtgcctcgtcgggcggctgaaaaagtgtttcctcct 31785653  T
Q  783 tcggtaaacatttgtcgaaaaatcatgctaccaattaccaaacttaaatttatctaccaaatctttcagtttcttaagactttgtaactttgacctgtag 882  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| ||    
T  31785652 tcggtaaacatttgtcgaaaa----tgctaccaattaccaaacttaaatttatctaccaaatctatcagtttcttaagtctttgtaattttgacctgcag 31785557  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 537 - 665
Target Start/End: Complemental strand, 31785926 - 31785796
Alignment:
Q  537 tttattaaatcaacctttgaatgatgtatgacacaatgccttaagtgata--actggttttgcaatttagataggtatatatatttttaagcatttaacc 634  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31785926 tttattagatcaacctttgaatgttgtatgacacaatgccttaagtgatataactggttttgcaatttagataggtatatatatttttaagcatttaacc 31785827  T
Q  635 atttatgcgtttgcagcaagagcaaaaagag 665  Q
    || |||||||||||| |||||||||||||||    
T  31785826 atgtatgcgtttgcaacaagagcaaaaagag 31785796  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 882 - 976
Target Start/End: Complemental strand, 31785515 - 31785423
Alignment:
Q  882 ggatttgcatggtaacgaaaagaaatttaggcatattcttctggaggtggagttacat-gctgaatttcactttaattgcaaaagtcggagttttc 976  Q
    |||||||||||||| |||| |||||||||||||||| |||||| ||||| |||||||  ||||||||||| |||||||||||| ||||||||||||    
T  31785515 ggatttgcatggtaccgaatagaaatttaggcatat-cttctg-aggtg-agttacaaagctgaatttcattttaattgcaaatgtcggagttttc 31785423  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 31786331 - 31786235
Alignment:
Q  305 gatcatttatcttatttattagtaacacttgcgttttttct--ctccnnnnnnnataacaaaactgatgagttggcaagccacttgagataatctta 399  Q
    |||| |||||||||||||||||||||||||  ||||||| |  ||||       || ||||||||||||||||||||| ||||||||||||||||||    
T  31786331 gatcctttatcttatttattagtaacacttatgttttttttttctccattttttattacaaaactgatgagttggcaaaccacttgagataatctta 31786235  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 31786902 - 31786843
Alignment:
Q  186 aatcaaagtaataaattgatgggttatggaattactactgcgagttgtcaaatatgtttcgt 247  Q
    ||||||| ||||||||||||||||||||||||||| |||   || |||||||||||||||||    
T  31786902 aatcaaaataataaattgatgggttatggaattaccact--aagatgtcaaatatgtttcgt 31786843  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 300998 - 300923
Alignment:
Q  185 caatcaaagtaataaattgatgggttatggaattactactgcgagttgtcaaatatgtttcgttgatagtatacaa 260  Q
    |||||||| ||||  ||||||| ||||||||||||||| | |||||||| |||| |||||||| ||||||||||||    
T  300998 caatcaaaataatggattgatgagttatggaattactattacgagttgttaaatctgtttcgtcgatagtatacaa 300923  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 11193558 - 11193507
Alignment:
Q  283 ttttcggcaaaatcactttagagatcatttatcttatttattagtaacactt 334  Q
    |||| |||||||| || |||||| |||||||||||||||||| |||||||||    
T  11193558 ttttaggcaaaattacattagaggtcatttatcttatttatttgtaacactt 11193507  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 23931781 - 23931815
Alignment:
Q  300 ttagagatcatttatcttatttattagtaacactt 334  Q
    ||||||||||||||||||||||||| |||||||||    
T  23931781 ttagagatcatttatcttatttatttgtaacactt 23931815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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