View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1807R-Insertion-5 (Length: 1060)
Name: NF1807R-Insertion-5
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 391 - 927
Target Start/End: Original strand, 6752677 - 6753217
Alignment:
| Q |
391 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6752677 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggggggatgaccttacacgtcgatactaaacaagtgtgtttgattctgcc |
6752776 |
T |
|
| Q |
491 |
tagacaaatatagaatttgaatgaattgattctggctaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcgggctggttgaa |
590 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6752777 |
tagacaaatatagattttgaatgaattgattctggttaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcaggttggttgaa |
6752876 |
T |
|
| Q |
591 |
cgtaaatttgaggctgatttaatttgcagagccaaaaactccgaattctacccgatttagaatcaattttggaggtaccagagaacatccaaacatgtca |
690 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6752877 |
cgtaaatttgaggctaatttaatttgcagagccaaaaactccgaattctacccgatttagaatcaattttggaggtaccagagaacatccaaacatgtca |
6752976 |
T |
|
| Q |
691 |
gtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttggtaac--tttgctg |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
6752977 |
gtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaagcatggttggtaacctctcgctg |
6753076 |
T |
|
| Q |
789 |
tgacaagttgagtcctaactcaatgnnnnnnncatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagcaatttctgtt-taca |
887 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6753077 |
tgacaag-tgagtcctaactcaatgtttttttcatgtttgtaatatatgaatcttacccttcattttcatgtttataacagtagcaatttctgttctaca |
6753175 |
T |
|
| Q |
888 |
c-ttttgtttatttggaatgtttca-ttttgttctgactaaa |
927 |
Q |
| |
|
| |||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
6753176 |
ctttttttttatttggaatgtttcatttttgttttgactaaa |
6753217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 6761729 - 6761945
Alignment:
| Q |
8 |
agattaagaggcagagcatgagcaaatttgatgccatacgagcctaaaaccgtaccttcgacactggagtgatagataccaagaccggcccaatacacat |
107 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
6761729 |
agattaagagacagagcatgattaaatttgaagacatacgagcc-aaaaccgtaccttcgacaccagagtgatagataccaagaccggcccaatacacgt |
6761827 |
T |
|
| Q |
108 |
aaccattcatgggtaccaagtcatacacattaagataaactggagtttttccaggttcatggctagctgaatttactttgcgaaatagcgataaacaagt |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| ||| |
|
|
| T |
6761828 |
aaccattcatgggtgtcaagtcatacacattaagataaactggagtttttccaggtccatggctagctgaatttactttgcgaaataaagaaaaacgagt |
6761927 |
T |
|
| Q |
208 |
caccggcgattttccttt |
225 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
6761928 |
caccggtgattttccttt |
6761945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 220 - 640
Target Start/End: Original strand, 6761973 - 6762408
Alignment:
| Q |
220 |
tcctttcttagagttcaatttcatctttccctaaggtga-cactcgcatagtacctgcattcaacaaatgtttga--tagagcatcgcctatttataatg |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| |
|
|
| T |
6761973 |
tcctttcttagacttcaatttcatctttccctaaggcgaacactcacatagtacctgcattcaacaaatgtttgagttagaggatcacctatttattatg |
6762072 |
T |
|
| Q |
317 |
ttca-cattctcagtcattnnnnnnnnnnnntttgttttgtataaaacaattagcagaaacttccttcttatgagataattcaggaaatacaaatgaata |
415 |
Q |
| |
|
|||| |||| ||| ||||| || || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| | |
|
|
| T |
6762073 |
ttcaacattttcactcattaaaaataaataacttacttggtataaaataattagcagaaacttccttcttatga--tgattcaggaaatacaaatgaaga |
6762170 |
T |
|
| Q |
416 |
tgcggtcaaatttcgacaaatg--------------gggggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcctagacaaatat |
501 |
Q |
| |
|
||| |||||||||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
6762171 |
tgcagtcaaatttcgacaaatgaactatttttaaggggggaagaaaagaccttacatgtcgatactaaaaaagcctgtttgattctgcgatgacaaatat |
6762270 |
T |
|
| Q |
502 |
a--gaatttgaatgaattgattctggctaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcgggctggttgaacgtaaattt |
599 |
Q |
| |
|
| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
6762271 |
atagattttgaatgaattgattctggttaaat-taagttgaatgtatagtaatttatgtttacacgttcatataaaagtgggttggttgaacataaattt |
6762369 |
T |
|
| Q |
600 |
gaggctgatttaatttgcagagccaaaaactccgaattcta |
640 |
Q |
| |
|
||| || | |||||||| || |||||||||| ||||||||| |
|
|
| T |
6762370 |
gagactaaattaatttgtag-gccaaaaact-cgaattcta |
6762408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 191 - 334
Target Start/End: Original strand, 6752502 - 6752643
Alignment:
| Q |
191 |
aatagcgataaacaagtcaccggcgattttcctttcttagagttcaatttcatctttccctaaggtgacactcgcatagtacctgcattcaacaaatgtt |
290 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6752502 |
aatagcgataaacaagtcaccggtgattttcctttcttag--ttcaatttcatctttccctaaggtgacactcacatagtacttgcattcaacaaatgtt |
6752599 |
T |
|
| Q |
291 |
tgatagagcatcgcctatttataatgttcacattctcagtcatt |
334 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6752600 |
tgatagagcatcacctatttataatgttcacattctcagtcatt |
6752643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 29829305 - 29829356
Alignment:
| Q |
508 |
tgaatgaattgattctggctaaaagtaagtcgaatgtatagtaatttatgtt |
559 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||| ||||||||| |
|
|
| T |
29829305 |
tgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtt |
29829356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 33843875 - 33843809
Alignment:
| Q |
493 |
gacaaatatagaatttgaatgaattgattctggctaaaagtaagtcgaatgtatagtaatttatgtt |
559 |
Q |
| |
|
|||||| || || ||||| |||||||||||||||||||||| ||| | ||||| ||| ||||||||| |
|
|
| T |
33843875 |
gacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtt |
33843809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 27045609 - 27045556
Alignment:
| Q |
506 |
tttgaatgaattgattctggctaaaagtaagtcgaatgtatagtaatttatgtt |
559 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
27045609 |
tttgaatgaattgattttagttaaaagtaagttgaatgtagagttatttatgtt |
27045556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University