View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807R-Insertion-6 (Length: 1015)

Name: NF1807R-Insertion-6
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807R-Insertion-6
NF1807R-Insertion-6
[»] chr6 (7 HSPs)
chr6 (9-1015)||(5920726-5921732)
chr6 (318-565)||(26968195-26968443)
chr6 (57-539)||(14813143-14813625)
chr6 (27-195)||(26967903-26968071)
chr6 (123-171)||(16733009-16733057)
chr6 (713-768)||(17118914-17118969)
chr6 (501-587)||(6340973-6341059)
[»] chr5 (5 HSPs)
chr5 (9-969)||(20325083-20326034)
chr5 (221-368)||(15447253-15447400)
chr5 (432-591)||(11922982-11923141)
chr5 (124-202)||(29125294-29125372)
chr5 (501-587)||(16992268-16992354)
[»] chr4 (5 HSPs)
chr4 (126-539)||(10636536-10636949)
chr4 (57-539)||(5237685-5238167)
chr4 (129-195)||(22178736-22178802)
chr4 (393-591)||(22642017-22642215)
chr4 (249-365)||(25226927-25227044)
[»] chr3 (5 HSPs)
chr3 (129-195)||(19588505-19588571)
chr3 (433-490)||(25571626-25571683)
chr3 (129-195)||(12283720-12283786)
chr3 (27-169)||(34503758-34503900)
chr3 (124-321)||(49728189-49728386)
[»] chr1 (2 HSPs)
chr1 (129-195)||(52776100-52776166)
chr1 (126-539)||(2358144-2358557)
[»] chr2 (6 HSPs)
chr2 (129-301)||(29497877-29498049)
chr2 (150-369)||(34893126-34893345)
chr2 (285-331)||(13129139-13129185)
chr2 (501-587)||(20485103-20485189)
chr2 (501-587)||(28016002-28016088)
chr2 (124-193)||(8309856-8309925)
[»] scaffold0329 (1 HSPs)
scaffold0329 (129-195)||(9429-9495)
[»] chr8 (2 HSPs)
chr8 (126-169)||(188136-188179)
chr8 (719-768)||(15756210-15756259)


Alignment Details
Target: chr6 (Bit Score: 793; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 9 - 1015
Target Start/End: Complemental strand, 5921732 - 5920726
Alignment:
Q  9 ggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||    
T  5921732 ggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcatcaatggctccattgaacaacccaatcttg 5921633  T
Q  109 atgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctt 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||     
T  5921632 atgatcttaaccggtctgcatgggaatgttgcaaccatttggttcaatcttggctcatcaattccgtttcaaattctattgctcaaactgttgtcttcta 5921533  T
Q  209 tgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaa 308  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  5921532 tgtcattgcttatgaggtatggcaagatctccatgaacgtatctctaaggttgatcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaa 5921433  T
Q  309 caaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5921432 caaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcatcacatagaccaattccatcttgtatttgtgttcatg 5921333  T
Q  409 cttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaa 508  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5921332 cttgccgttgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactggtttgaatgataattttggggttgttaa 5921233  T
Q  509 gactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctct 608  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  5921232 gactcaagttcttcttcttgatcctcttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcact 5921133  T
Q  609 gcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactag 708  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||     
T  5921132 gcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatcacaaggacgtggtaaaggt--tcttttgttcattctcaaaaacctactac 5921035  T
Q  709 gtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgca 808  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  5921034 gtattgcaccttttgtcacaagactaatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgca 5920935  T
Q  809 gctactcatgagatccttgatgaaaatggtgcattggatcatggtttnnnnnnnctctacaggttctggtacttgtttgtctccagagcaatatactcaa 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||    
T  5920934 gctactcatgagatccttgatgaaaatggtgcattggatcatggttt-ggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaa 5920836  T
Q  909 cttgtt--ccttgctacaacatgctagtttgggtttcctcatcatctctcccttctacttc-aatgccaccacca--catgtccaaggtcacttcctttg 1003  Q
    ||||||  | ||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| |||||||||  ||| ||||| |||||| | ||||    
T  5920835 cttgtttcctttgctacaacaggcaagttt-ggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaa-gtcactccttttg 5920738  T
Q  1004 tttctattagca 1015  Q
    |||||| |||||    
T  5920737 tttctactagca 5920726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 318 - 565
Target Start/End: Original strand, 26968195 - 26968443
Alignment:
Q  318 aaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccatt 417  Q
    |||| ||||||||| ||||||||||| |||||    |||||| | ||||||||  |||||||||| |||||  ||||| | ||||||||| |||| | ||    
T  26968195 aaatctgttcttgaatattttactgagttgaagagtttatggtaggaactttcttcacatagacctattcctacttgtgtatgtgttcatccttgtcgtt 26968294  T
Q  418 gtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga-taattttggggttgttaagactcaag 516  Q
    |||| || ||||| ||||||||| | || |||| ||| || ||||| ||||| ||| ||||| ||||||||||  ||||||    | | |||||||||||    
T  26968295 gtgaagcaactagagttgctaaggtgtatagaaatgaagaccaaattatgcaatttctgactggtttgaatgaccaattttaccatagataagactcaag 26968394  T
Q  517 ttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgt 565  Q
    |  |  | ||||||||| ||||| ||||||| || ||||||||||||||    
T  26968395 tcatgttacttgatcctattccttctctcaataaagtttactctcttgt 26968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 57 - 539
Target Start/End: Original strand, 14813143 - 14813625
Alignment:
Q  57 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 156  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  14813143 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 14813242  T
Q  157 cttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaa 256  Q
    ||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||| ||||  ||| |  | ||| | ||||| ||    
T  14813243 cttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgaggtttggcttgatttgaaagaacgattctccaa 14813342  T
Q  257 ggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtta 356  Q
      ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||| | || ||||| |||||| ||||  | |||    
T  14813343 aattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatctgttttggattatttcactgaaatgaagtcctta 14813442  T
Q  357 tgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgagg 456  Q
    ||||| ||| | ||  |||||||||| || ||   ||||  |||||||||| |||| | ||||| |||  |||  |||||||||||| | |||| |||||    
T  14813443 tgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgagg 14813542  T
Q  457 atcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct 539  Q
    |||| || ||||| ||| | ||  | ||||||||| | |||   |||||||  |||||||||||||| |||||||||||||||    
T  14813543 atcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct 14813625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 26967903 - 26968071
Alignment:
Q  27 tggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctg 126  Q
    ||||||| |||||||||||||||  | || || |||||||| |||| ||||| ||| || ||||||     |||||| ||||| |||||||||||   ||    
T  26967903 tggaatcattccatgaagcgttcattgggaacaaagaacaaacttgaattcaacaacggatccattcctacacctgaccttgaagatcttaaccgtagtg 26968002  T
Q  127 catgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
      ||||||||  |||| || |||||||||||||||||||| ||||  |||||| |||| ||||||||||    
T  26968003 tttgggaacgcagcaatcacttggttcaatcttggctcattaattctgtttcatattccattgctcaaa 26968071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16733057 - 16733009
Alignment:
Q  123 tctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatt 171  Q
    |||||||||||||| || || |||||||| |||||||||||||||||||    
T  16733057 tctgcatgggaacggtgtaatcatttggtgcaatcttggctcatcaatt 16733009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 768
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
Q  713 tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg 768  Q
    ||||| |||| | |||||| |||||| || ||||||||||||||||||||||||||    
T  17118914 tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg 17118969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 501 - 587
Target Start/End: Original strand, 6340973 - 6341059
Alignment:
Q  501 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 587  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  6340973 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 6341059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 9 - 969
Target Start/End: Complemental strand, 20326034 - 20325083
Alignment:
Q  9 ggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttg 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||||||||||||||    
T  20326034 ggttccaattatctagcttggaatcgttccatgaagcgttctctaggcacaaagaacaagcttggttttatcaatggctcaattgaacaacctgatcttg 20325935  T
Q  109 atgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctt 208  Q
    |||||||||| || ||||||||||||||||| ||   |||||| ||||||||| | |||||||  |||||||||||||||||||||| ||||||||| |     
T  20325934 atgatcttaatcgatctgcatgggaacgttgtaattttttggtgcaatcttggataatcaattctgtttcagattctattgctcaaactgttgtctttta 20325835  T
Q  209 tgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaa 308  Q
    || || ||| |||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||||    
T  20325834 tgacactgcttatgaggtatggcaagatcttcatgaacgtttttctaaggctgatcgtattcgtattgcaaatttgcgttcttccattaacaacttgaaa 20325735  T
Q  309 caaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatg 408  Q
    ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||| | ||||||||||    
T  20325734 caaggtgcaaaatctgttcttgagtattttactgaattgaaatctttatgggaagaactttcatcacatagacctattccatcttgtgtgtgtgttcatg 20325635  T
Q  409 cttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaa 508  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  20325634 cttgccgttgtgatgctactagggtggctaagatttacagaactgaggatcaaattatgcagtttttgactggtttgaatgataattttggagttgttaa 20325535  T
Q  509 gactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctct 608  Q
    ||||||||||||||||||| |||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  20325534 gactcaagttcttcttcttaatcctcttccacctcttaataaagtttattctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctct 20325435  T
Q  609 gcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactag 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     ||||||| ||||||||||||||| |||    
T  20325434 gcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcccaaggacgtggtaaagg-----ttttgttaattctcaaaaacctaatag 20325340  T
Q  709 gtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgca 808  Q
    ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||||||||| ||| |   |     
T  20325339 gtactgcactttttgtcacaaaactaatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtga---ct 20325243  T
Q  809 gctactcatgagatccttgatgaaaatggtgcattggatcatggtttnnnnnnnctctacaggttctggtacttgtttgtctccagagcaatatactcaa 908  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||    
T  20325242 gcttctcatgagatccctgatgaaaatggtgcattggatcatggttt-ggggggctctacaggttctggtactagtttgtctccagagcaatatactcaa 20325144  T
Q  909 cttg-ttccttgctacaacatgctagtttgggtttcctcatcatctctcccttctacttcaa 969  Q
    |||| ||||||||| || || |||||||| | |||||||||||||||  ||| |||||||||    
T  20325143 cttgtttccttgctgcagcaggctagttt-gatttcctcatcatctcctcctcctacttcaa 20325083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 368
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
Q  221 tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa 320  Q
    |||||| |||||||||||  | ||  |||| || || |||||||| ||| | |||  |||||| ||||| || ||||||||| | ||||||||| ||| |    
T  15447253 tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata 15447352  T
Q  321 tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt 368  Q
    | |||| | |||||||| ||||| |||||||| |||||||||||||||    
T  15447353 tttgttttggagtatttcactgagttgaaagctttatgggaagaactt 15447400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 432 - 591
Target Start/End: Original strand, 11922982 - 11923141
Alignment:
Q  432 gttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatc 531  Q
    ||||| |||||||||| |||| | |||||||||||||| ||| ||||  | ||||||||| | |||   ||  | || ||||||||| | ||||||||||    
T  11922982 gttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatc 11923081  T
Q  532 ctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt 591  Q
    || ||||| | || || ||||||||||  ||||| ||  |||||||||||||||| ||||    
T  11923082 ctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt 11923141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 29125294 - 29125372
Alignment:
Q  124 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgt 202  Q
    ||||||||||||| ||||| |||||||| || |||||||| ||||| | |||||| ||||| ||||| |||| ||||||    
T  29125294 ctgcatgggaacgctgcaatcatttggtgcagtcttggcttatcaactccgtttctgattcaattgcacaaactgttgt 29125372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 16992354 - 16992268
Alignment:
Q  501 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 587  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  16992354 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 16992268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 126 - 539
Target Start/End: Original strand, 10636536 - 10636949
Alignment:
Q  126 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgagg 225  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| |  | ||| || || |||||||||| | |||| || | ||    ||||  |||||    
T  10636536 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaactcagattctgagtccattgctcaaactattgttttttgtgattctgcacttgagg 10636635  T
Q  226 tatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgt 325  Q
    | ||||  ||| |  | ||||  ||||| ||  ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||    
T  10636636 tttggcttgatttgaaagaaaaattctccaaaattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatctgt 10636735  T
Q  326 tcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgct 425  Q
    | | || ||||| |||||| ||||  | |||||||| ||| | ||  |||||||||| || ||   ||||  |||||||||| |||| | ||||| |||     
T  10636736 tttggattatttcactgaaatgaagtccttatgggaggaattatcttcacatagacctatccctaattgttcttgtgttcatccttgtcgttgtgctgca 10636835  T
Q  426 actagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttc 525  Q
     |||| |||||||||||| | |||| ||||||||| || ||||| ||| | ||  | ||||||||  | |||   |||||||  |||||||||||||| |    
T  10636836 tctagagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgaccaattttctgttgttagaactcaagttcttctcc 10636935  T
Q  526 ttgatcctcttcct 539  Q
    ||||||||||||||    
T  10636936 ttgatcctcttcct 10636949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 539
Target Start/End: Original strand, 5237685 - 5238167
Alignment:
Q  57 acgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctgcatgggaacgttgcaaccatttggttcaat 156  Q
    ||||||||||||||||| |||| |||||| ||||||      ||||||   |||||| | |||||  | ||||||||||| || || |||||||||||||    
T  5237685 acgaagaacaagcttggtttcatcaatggttccattcctatgcctgatgaagatgatttgaaccgcacagcatgggaacgctgtaatcatttggttcaat 5237784  T
Q  157 cttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaa 256  Q
    ||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||| ||||  ||| |  | ||| | ||||| ||    
T  5237785 cttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgaggtttggcttgatttgaaagaacgattctccaa 5237884  T
Q  257 ggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgtta 356  Q
      ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||   ||||| |||| | || ||||| |||||| ||||  | |||    
T  5237885 aattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggattaaaatctgttttggattatttcactgaaatgaagtcctta 5237984  T
Q  357 tgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgagg 456  Q
    ||||| ||| | ||  |||||||||  || ||   ||||  |||||||||| |||| | ||||| |||  |||  |||||||||||| | |||| |||||    
T  5237985 tgggaggaattatcttcacatagacatatccctaattgttcttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgagg 5238084  T
Q  457 atcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcct 539  Q
    |||| || ||||| ||| | ||  | ||||||||| | |||   |||||||  |||||||||||||| |||||||||||||||    
T  5238085 atcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttcct 5238167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 22178802 - 22178736
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  22178802 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 22178736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 591
Target Start/End: Original strand, 22642017 - 22642215
Alignment:
Q  393 tgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgata 492  Q
    ||||||||||| ||| | ||||  ||||| |||||| | ||||| |||| | | ||||||||||||||||| ||||| ||||| ||| | |||||||||     
T  22642017 tgtatttgtgtgcatccatgccggtgtgaagctactcgtgttgccaagactcatagaactgaggatcaaataatgcaatttttaactggcttgaatgatc 22642116  T
Q  493 attttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt 591  Q
    | ||    || || ||||||||  ||||  | ||||||||||| ||| || | || |||||||| ||| | ||| | |||||||| |||||||||||||    
T  22642117 aattctctgtggtaaagactcagattctattgcttgatcctctaccttctttgaataaggtttattctatggtgattcaagaagagagcaataattctt 22642215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 365
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
Q  249 ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg 347  Q
    ||||||||| |||||||| || | | || ||||| ||||||||||  |||||||| | | ||||||| | ||||||||  | |||||||| | |||| ||    
T  25226927 ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg 25227026  T
Q  348 aaagcgttatgggaagaa 365  Q
    ||||| ||||||||||||    
T  25227027 aaagctttatgggaagaa 25227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 19588571 - 19588505
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
    |||||||| |||||||||||||| ||||||||||| || |||| |||||| ||||| ||||||||||    
T  19588571 tgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaa 19588505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 433 - 490
Target Start/End: Original strand, 25571626 - 25571683
Alignment:
Q  433 ttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga 490  Q
    |||||||| ||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  25571626 ttgctaagctttacagaaccaaggatcaaatcattcagtttttgactggtttgaatga 25571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 12283720 - 12283786
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||  ||||| ||||||||||    
T  12283720 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaa 12283786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 34503900 - 34503758
Alignment:
Q  27 tggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaacaacctgatcttgatgatcttaaccggtctg 126  Q
    ||||||| ||||||||||||| || || | |||||||||||  ||||||||| |||||| ||||||     |||||||||||| |||||||| ||   ||    
T  34503900 tggaatcattccatgaagcgtgctttaagaacgaagaacaaaattggattcatcaatggttccattcccacacctgatcttgaagatcttaatcgcaatg 34503801  T
Q  127 catgggaacgttgcaaccatttggttcaatcttggctcatcaa 169  Q
    | | ||||| ||| || || |||||||||| |||||| |||||    
T  34503800 cttaggaacattgtaatcacttggttcaatattggcttatcaa 34503758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 321
Target Start/End: Complemental strand, 49728386 - 49728189
Alignment:
Q  124 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatga 223  Q
    |||| |||||||||||||| ||  | ||||||||||||||||||||||  ||||| ||||| || || ||||   |||| |||| ||  | ||||  |||    
T  49728386 ctgcttgggaacgttgcaatcaccttgttcaatcttggctcatcaattcagtttctgattccatcgcgcaaaccattgttttctgtgatactgcacttga 49728287  T
Q  224 ggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat 321  Q
    ||| ||||  ||  |  | ||| |||||| |||  ||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| ||||||||||    
T  49728286 ggtttggcttgacttgaaagaacgtttctttaaaattgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat 49728189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 52776100 - 52776166
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  ||||| ||||| ||||||||||    
T  52776100 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaa 52776166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 539
Target Start/End: Original strand, 2358144 - 2358557
Alignment:
Q  126 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgagg 225  Q
    ||||||||||| || || |||||||||||||||||||| ||||| |  ||||| || || |||||||||| | |||| || | ||    ||||  |||||    
T  2358144 gcatgggaacgctgtaatcatttggttcaatcttggcttatcaactctgtttctgagtccattgctcaaactattgttttttgtgattctgcacttgagg 2358243  T
Q  226 tatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgt 325  Q
    | ||||  ||| |  | ||| | ||||| ||  ||||||| ||||| ||| ||||||| ||||||   || || ||||||||||||||  |||||| |||    
T  2358244 tttggcttgatttgaaagaacgattctccaaaattgatcgtattcgcattgcaaatttacgttctaacatcaataatttgaaacaaggatcaaaatttgt 2358343  T
Q  326 tcttgagtattttactgaattgaaagcgttatgggaagaactttcaccacatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgct 425  Q
    | | || ||||| |||||| | ||  | |||||||| ||| | ||  |||||||||| || ||   ||||  |||| ||||| |||| | ||||| |||     
T  2358344 tttggattatttcactgaaataaagtccttatgggaggaattatcttcacatagacctatccctaattgttcttgtattcatccttgtcgttgtgctgca 2358443  T
Q  426 actagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttc 525  Q
     |||  |||||||||||| | |||| ||||||||| || ||||| ||| | ||  | ||||||||| | |||   || ||||  |||||||||||||| |    
T  2358444 tctaaagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgatcaattttctgtggttagaactcaagttcttctcc 2358543  T
Q  526 ttgatcctcttcct 539  Q
    ||||||||||||||    
T  2358544 ttgatcctcttcct 2358557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 301
Target Start/End: Original strand, 29497877 - 29498049
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtat 228  Q
    |||||||| ||||||||| |||| ||||||||||| |  ||||| ||||| ||||  |||||||||| | |||| |||| ||  | ||| | ||| || |    
T  29497877 tgggaacgatgcaaccatgtggtacaatcttggcttactaattttgtttctgatttcattgctcaaactattgttttctatgatactgcctttgatgttt 29497976  T
Q  229 ggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaa 301  Q
    |||| ||||| || ||||| || |||||||||||||| || || ||| | ||| |||||||| | ||||||||    
T  29497977 ggcatgatctgcaagaaagattttctaaggttgatcgtatacgcattgctaatctgcgttctaccattaacaa 29498049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 369
Target Start/End: Complemental strand, 34893345 - 34893126
Alignment:
Q  150 gttcaatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtt 249  Q
    ||||||||||||| ||||||||  |||||  |||||||||| ||||   | |||||   || || ||| | ||| || |||||||||||| |  || | |    
T  34893345 gttcaatcttggcccatcaattatgtttctaattctattgcgcaaacgatcgtctttcatgacactgcctttgatgtttggcaagatctcaacaaatgat 34893246  T
Q  250 tctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaa 349  Q
    | ||||| |||||||| ||||| ||| ||||| | ||||| || ||||||||  | || |||||| | |||| |||  | ||||||||||||||||||||    
T  34893245 tttctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaa 34893146  T
Q  350 agcgttatgggaagaacttt 369  Q
    |||  | |||||||||||||    
T  34893145 agctctttgggaagaacttt 34893126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
Q  285 cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga 331  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||||    
T  13129139 cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga 13129185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 20485189 - 20485103
Alignment:
Q  501 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 587  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  20485189 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 20485103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 501 - 587
Target Start/End: Original strand, 28016002 - 28016088
Alignment:
Q  501 gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat 587  Q
    ||||| |||||||||||||||||| | ||||| |||||| |  |||| |||||||| ||| | || || ||||||||||| ||||||    
T  28016002 gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat 28016088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 8309856 - 8309925
Alignment:
Q  124 ctgcatgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctca 193  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||| || || ||||| ||||| ||| ||||    
T  8309856 ctgcatgggaacggtgcaatcatctcgttcaatcttggctcattaactttgtttctgattcaatttctca 8309925  T

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Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 9429 - 9495
Alignment:
Q  129 tgggaacgttgcaaccatttggttcaatcttggctcatcaatttcgtttcagattctattgctcaaa 195  Q
    |||||||| |||||||||||||| |||||||||||||| ||||  || || ||||| ||||||||||    
T  9429 tgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaa 9495  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 188136 - 188179
Alignment:
Q  126 gcatgggaacgttgcaaccatttggttcaatcttggctcatcaa 169  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  188136 gcatgggaacgatgcaatcatttggttcaatcttggcttatcaa 188179  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 719 - 768
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
Q  719 ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg 768  Q
    |||||||||||||||||||||||  | || ||||| ||||||||||||||    
T  15756210 ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg 15756259  T

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