View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807R-Insertion-7 (Length: 818)
Name: NF1807R-Insertion-7
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807R-Insertion-7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 433 - 818
Target Start/End: Original strand, 24449595 - 24449967
Alignment:
| Q |
433 |
aaatgagttatatttggctttatgtcccaattaagaaccccacttaagttgnnnnnnnn-ttattggtggaaattatttaaaacttttttcattggtgtt |
531 |
Q |
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| T |
24449595 |
aaatgagttatatttggctttatgtcccacgtaagaaccccacttaagttgaaaaaaaaattattggtggaaattatttaaaacttttttcattggtgtt |
24449694 |
T |
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| Q |
532 |
atagaattattgatataagataaagataaatataagatnnnnnnnntattggtggaaatcatttaaaacttttttcattggtgttagtttgaatgtttag |
631 |
Q |
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| T |
24449695 |
atagaattattgatataagataaaaaaaa-----------------tattggtcgaaatcatttaaaacttttttcattggtgttagattgaatgtttag |
24449777 |
T |
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| Q |
632 |
tatgtacgattattaaaaaattataaatgagtaatttataaatgtgagattcgcttaagtacttaaaagtggatattttataatggatggtgtgagaagc |
731 |
Q |
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| T |
24449778 |
tatatacgattattaaaaagttataaatgaataatttgtaaatgtgagattcgcttaagtacttaaaagtggatattttataatggatgatgtgagaagc |
24449877 |
T |
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| Q |
732 |
tagataggggatatctcaaacttctaaat---aactcaacaacgtttaaatgagatgacacatgattcttctagcttgaccagggttctg |
818 |
Q |
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| T |
24449878 |
tagataggggatatctcaaacttctaaataacaactcgacaacgtttaaatgagatgacacatgattcttctagtttgatcagggttctg |
24449967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 24449335 - 24449500
Alignment:
| Q |
168 |
ttggtgagcaaagatccatctcaagagttttaaagacaaggtgcaaggttctatatatctctggaaaatagtctaagtgttgggatgtgaatgcttaagt |
267 |
Q |
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| T |
24449335 |
ttggtgagcaaagatccatctcaaaagttttaaagacaaggtgcaaggttc----tatctctgaaaaatagtctaagtgttaggatgtgaatgcttaagt |
24449430 |
T |
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| Q |
268 |
tgnnnnnnnnnnnntgcctgagctttgtctaacatgaagctctgaaaaatggtccaagagtggactcatc |
337 |
Q |
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| T |
24449431 |
tgaaaaaataaaaatgcctgagctttgtctaacatgaagctctgaaaaatggtccaagagtggactcatc |
24449500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 664
Target Start/End: Original strand, 55272865 - 55272909
Alignment:
| Q |
620 |
ttgaatgtttagtatgtacgattattaaaaaattataaatgagta |
664 |
Q |
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| T |
55272865 |
ttgagtgtttattatgtactattattaaaaaattataaatgagta |
55272909 |
T |
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