View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807R-Insertion-9 (Length: 799)

Name: NF1807R-Insertion-9
Description: NF1807R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807R-Insertion-9
NF1807R-Insertion-9
[»] chr2 (5 HSPs)
chr2 (607-792)||(39384238-39384423)
chr2 (9-236)||(39384782-39385009)
chr2 (352-536)||(39384492-39384676)
chr2 (284-332)||(39384678-39384727)
chr2 (114-149)||(17768420-17768455)
[»] chr3 (3 HSPs)
chr3 (333-443)||(6913535-6913645)
chr3 (115-149)||(48676837-48676871)
chr3 (115-149)||(49283619-49283653)
[»] scaffold0187 (4 HSPs)
scaffold0187 (114-222)||(10549-10657)
scaffold0187 (114-222)||(20877-20985)
scaffold0187 (118-222)||(10934-11038)
scaffold0187 (118-222)||(21262-21366)
[»] chr5 (2 HSPs)
chr5 (114-206)||(40600737-40600829)
chr5 (115-176)||(40601391-40601452)
[»] scaffold0421 (1 HSPs)
scaffold0421 (105-149)||(7287-7332)
[»] scaffold0220 (1 HSPs)
scaffold0220 (114-176)||(20594-20656)
[»] chr8 (3 HSPs)
chr8 (115-149)||(37355048-37355082)
chr8 (106-206)||(13544547-13544648)
chr8 (106-206)||(13679825-13679926)
[»] chr4 (1 HSPs)
chr4 (114-149)||(16499122-16499157)
[»] chr1 (1 HSPs)
chr1 (117-151)||(51720738-51720772)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 6e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 607 - 792
Target Start/End: Complemental strand, 39384423 - 39384238
Alignment:
Q  607 aacaattttaagttacttaatgtcaaaattaagctttcgttatcattttataagtggaatgtaaaagttatttacattctaaatcacaggtcactttgac 706  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39384423 aacaattttaagttacttattgtcaaaattaagctttcgttatcattttataagtggaatgtaaaagttatttacattctaaatcacaggtcactttgac 39384324  T
Q  707 aattaaaaaatatagttaatcttgtgctaaaaaatttatgaattatttcataaaattattctttattaatgattgaagttcttgtt 792  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39384323 aattaaaaaatatagttaatcttgtgctaaaaaatttatgaattatttcataaaattattctttattaatgattgaagttcttgtt 39384238  T

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Target: chr2; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 39385009 - 39384782
Alignment:
Q  9 acttcttcccttcacttggannnnnnnattaaaacaaagtccacattcatatctctcatttcattcctatataagtagtcactagtctttcttataaaga 108  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39385009 acttcttcccttcacttggatttttttattaaaacaaagtccacattcatatctctcatttcattcctatataagtagtcactagtctttcttataaaga 39384910  T
Q  109 gaaatctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgt 208  Q
    |||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||       |||||||||||||||||| ||||||    
T  39384909 gaaatctagggtcatacccactaacactctcttttaacacacctaataaaaatcagcaatgtgtcccatttttttaattcaatttacttgtaatctgcgt 39384810  T
Q  209 atcccttttctaaacttttgtatttttt 236  Q
    ||||| ||||||||||||||||||||||    
T  39384809 atcccgtttctaaacttttgtatttttt 39384782  T

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Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 352 - 536
Target Start/End: Complemental strand, 39384676 - 39384492
Alignment:
Q  352 aactgttaaaattagccataagtgtatgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataaatcattttaa 451  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39384676 aactgttaaaattagccataagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataattcattttaa 39384577  T
Q  452 gtatttatctttttactatgacatttttaggataannnnnnnctccataaaatgcataaaaatgagaatattttgaatagtttcc 536  Q
    |||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  39384576 gtatttatctttttgctatgacatttttaggataatttttttctccataaaatgcataaaaatgagaatattttgaatagtttcc 39384492  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 39384727 - 39384678
Alignment:
Q  284 tgttgagaaacaacatg-atgagtttagatctgaatcaagtctattaatg 332  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39384727 tgttgagaaacaacatggatgagtttagatctgaatcaagtctattaatg 39384678  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 17768420 - 17768455
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacaca 149  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17768420 ctagggtgacatccactaacactctcttttaacaca 17768455  T

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Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 333 - 443
Target Start/End: Original strand, 6913535 - 6913645
Alignment:
Q  333 ggaattttcttgcttatataactgttaaaattagccataagtgtatgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattg 432  Q
    ||||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6913535 ggaatttccttacttatataactgttaatattagccatcagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggatttg 6913634  T
Q  433 gaatcataaat 443  Q
    |||||||||||    
T  6913635 gaatcataaat 6913645  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 48676837 - 48676871
Alignment:
Q  115 tagggtcacatccactaacactctcttttaacaca 149  Q
    |||||||||||||||||||| ||||||||||||||    
T  48676837 tagggtcacatccactaacattctcttttaacaca 48676871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 49283619 - 49283653
Alignment:
Q  115 tagggtcacatccactaacactctcttttaacaca 149  Q
    ||||||||||| |||||||||||||||||||||||    
T  49283619 tagggtcacattcactaacactctcttttaacaca 49283653  T

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Target: scaffold0187 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 10549 - 10657
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccc 213  Q
    |||||||||||  |||||||||||||||||||||||   ||||||||| ||| ||||||||||       ||||||||||||||||||||||| |||||     
T  10549 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatttacttgtaacctgcttatcct 10648  T
Q  214 ttttctaaa 222  Q
     ||||||||    
T  10649 gtttctaaa 10657  T

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Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 20877 - 20985
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccc 213  Q
    |||||||||||  |||||||||||||||||||||||   ||||||||| ||| ||||||||||       ||||||||||||||||||||||| |||||     
T  20877 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatttacttgtaacctgcttatcct 20976  T
Q  214 ttttctaaa 222  Q
     ||||||||    
T  20977 gtttctaaa 20985  T

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Target: scaffold0187; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 11038 - 10934
Alignment:
Q  118 ggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccctttt 217  Q
    ||||||| |||||||||||||||||||||||||  ||||||||| | | ||||||| ||       ||||||||||||||||||||||| |||||  |||    
T  11038 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatttacttgtaacctgcttatcctgttt 10939  T
Q  218 ctaaa 222  Q
    |||||    
T  10938 ctaaa 10934  T

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Target: scaffold0187; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 21366 - 21262
Alignment:
Q  118 ggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgcgtatccctttt 217  Q
    ||||||| |||||||||||||||||||||||||  ||||||||| | | ||||||| ||       ||||||||||||||||||||||| |||||  |||    
T  21366 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatttacttgtaacctgcttatcctgttt 21267  T
Q  218 ctaaa 222  Q
    |||||    
T  21266 ctaaa 21262  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 40600737 - 40600829
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacctgc 206  Q
    ||||| ||||| |||||||||||||||||||||||||  ||||||||| ||| |||| |||||       |||||||||||||||||||||||    
T  40600737 ctaggatcacacccactaacactctcttttaacacatccaataaaaattagccatgtatcccatttttttaattcaatttacttgtaacctgc 40600829  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 40601452 - 40601391
Alignment:
Q  115 tagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtccca 176  Q
    |||||||||| ||||||||||||||||||||||||   ||||||||| ||| ||||||||||    
T  40601452 tagggtcacacccactaacactctcttttaacacacccaataaaaattagctatgtgtccca 40601391  T

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Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 7332 - 7287
Alignment:
Q  105 aagagaaat-ctagggtcacatccactaacactctcttttaacaca 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7332 aagagaaatgctagggtcacatccactaacactctcttttaacaca 7287  T

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Target: scaffold0220 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 20656 - 20594
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtccca 176  Q
    |||||||| || ||||||||||||||||||||||||   ||||||||||||  ||||||||||    
T  20656 ctagggtcccacccactaacactctcttttaacacacccaataaaaatcagtcatgtgtccca 20594  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 37355082 - 37355048
Alignment:
Q  115 tagggtcacatccactaacactctcttttaacaca 149  Q
    |||||||||||||||||||||||||||||||||||    
T  37355082 tagggtcacatccactaacactctcttttaacaca 37355048  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 13544547 - 13544648
Alignment:
Q  106 agagaaat-ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacct 204  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||   ||||||||| | | |||| |||||       |||||||||||| ||||||||    
T  13544547 agagaaatgctaggctcacacccactaacactctcttttaacacacccaataaaaattaactatgtatcccatttttttaattcaatttacctgtaacct 13544646  T
Q  205 gc 206  Q
    ||    
T  13544647 gc 13544648  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 13679926 - 13679825
Alignment:
Q  106 agagaaat-ctagggtcacatccactaacactctcttttaacacatttaataaaaatcagcaatgtgtcccannnnnnnaattcaatttacttgtaacct 204  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||   ||||||||| | | |||| |||||       |||||||||||| ||||||||    
T  13679926 agagaaatgctaggctcacacccactaacactctcttttaacacacccaataaaaattaactatgtatcccatttttttaattcaatttacctgtaacct 13679827  T
Q  205 gc 206  Q
    ||    
T  13679826 gc 13679825  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 16499122 - 16499157
Alignment:
Q  114 ctagggtcacatccactaacactctcttttaacaca 149  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16499122 ctagggtcacacccactaacactctcttttaacaca 16499157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 51720772 - 51720738
Alignment:
Q  117 gggtcacatccactaacactctcttttaacacatt 151  Q
    |||||||| ||||||||||||||||||||||||||    
T  51720772 gggtcacacccactaacactctcttttaacacatt 51720738  T

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