View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807_high_4 (Length: 249)
Name: NF1807_high_4
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13085820 - 13085585
Alignment:
| Q |
1 |
tttaatgtttatgataagttagtgttatccttggnnnnnnnataataccggtattcaatttggtttattttcggttaattctctatctaactacactttg |
100 |
Q |
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| T |
13085820 |
tttagtgtttatgataagttagtgttatccttggttcttttctaataccggtattcaatttggtttattttcggttaattctctatctacctacactttg |
13085721 |
T |
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| Q |
101 |
gatatataaaaagggttatgtattccatcttatattagataataatttattctagtctttattaagaaattcctaggaattctttatctttgtcaattta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13085720 |
gatatataaaaagggttatgtattccatcttatattaga---taatttattctagtctttattaagaaattcctaggaattctttatctttgtcaattta |
13085624 |
T |
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| Q |
201 |
ttacaaattctctatgtttctatagttattaagcctttg |
239 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
13085623 |
ttacaaattctctatatttctatagttattaagcctttg |
13085585 |
T |
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