View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807_high_6 (Length: 231)

Name: NF1807_high_6
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807_high_6
NF1807_high_6
[»] chr1 (14 HSPs)
chr1 (1-225)||(13085868-13086092)
chr1 (98-221)||(13271444-13271567)
chr1 (15-221)||(13081076-13081282)
chr1 (48-221)||(12964086-12964259)
chr1 (44-221)||(13244732-13244909)
chr1 (128-191)||(19279409-19279472)
chr1 (49-226)||(30368314-30368491)
chr1 (83-207)||(13094242-13094366)
chr1 (49-191)||(13070417-13070559)
chr1 (83-191)||(13129671-13129779)
chr1 (83-191)||(13161364-13161472)
chr1 (51-226)||(13100812-13100987)
chr1 (83-187)||(13010616-13010720)
chr1 (45-221)||(13065424-13065600)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13085868 - 13086092
Alignment:
Q  1 catatatcaataagcattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggaga 100  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13085868 catatatcaatgagcattcttaacttcaaaaaactgataatgtttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggaga 13085967  T
Q  101 acaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13085968 acaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaa 13086067  T
Q  201 tatctttcccaagacaacttcgagg 225  Q
    |||||||||||||||||||||||||    
T  13086068 tatctttcccaagacaacttcgagg 13086092  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 13271444 - 13271567
Alignment:
Q  98 agaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgc 197  Q
    |||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||| || ||    
T  13271444 agaacaatcgaaaccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagc 13271543  T
Q  198 taatatctttcccaagacaacttc 221  Q
    ||||||||||||||||||| ||||    
T  13271544 taatatctttcccaagacagcttc 13271567  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 13081282 - 13081076
Alignment:
Q  15 cattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactct 114  Q
    |||||| ||||| | ||||||  ||||| ||||||||||| |||||| ||| || |||||| || || |||||||||||||| || | ||||||||| ||    
T  13081282 cattctgaactttataaaacttgtaatgcttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccct 13081183  T
Q  115 tggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaaga 214  Q
     ||| |||  || ||||||||||| || || |||||||||||  |||| |  ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  13081182 aggaattattgagtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaaga 13081083  T
Q  215 caacttc 221  Q
    || ||||    
T  13081082 cagcttc 13081076  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 12964259 - 12964086
Alignment:
Q  48 atcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtat 147  Q
    ||||||| ||||||  ||| |||||||| || || ||||||| ||| || ||||| |||| ||| |||||||| ||| | ||||||||||| |||| |||    
T  12964259 atcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctat 12964160  T
Q  148 gtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    |||||||||||| || | |  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  12964159 gtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttc 12964086  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 13244909 - 13244732
Alignment:
Q  44 ttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 143  Q
    ||||||||||| |||||| |||| |||| ||| || || || |||| |||||| |  |||||||||  |||  | |||||||  ||||||||||| || |    
T  13244909 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 13244810  T
Q  144 gtatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    ||||| ||||||||||||| | || |||||||||||||||||||||||| | ||||| ||||||||||| ||||||||    
T  13244809 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttc 13244732  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 19279472 - 19279409
Alignment:
Q  128 tgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattttcatttgaa 191  Q
    ||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  19279472 tgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaa 19279409  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 30368491 - 30368314
Alignment:
Q  49 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 148  Q
    |||||| |||||| || |||| ||||| || || ||||||| ||| |  || |||| |||| | || || |||||||  ||||||||||| || ||||||    
T  30368491 tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg 30368392  T
Q  149 tgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggt 226  Q
    |||||||||||||| |  |||||||||||||| ||||||||||| |  |||| |||||| || | |||||||| ||||    
T  30368391 tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt 30368314  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 13094242 - 13094366
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13094242 ccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13094341  T
Q  183 tcatttgaacaatgctaatatcttt 207  Q
    |||||||||  |  |||||||||||    
T  13094342 tcatttgaatgaaactaatatcttt 13094366  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 13070559 - 13070417
Alignment:
Q  49 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 148  Q
    |||||| |||||| || | ||||| || ||||| ||||||| |||| | |||||||  ||||   |||| |||||||  ||||||||||| || ||||||    
T  13070559 tcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgaccttccaccacctgtatg 13070460  T
Q  149 tgaaacttccataatatagcagctgcaaccattttcatttgaa 191  Q
    |||||||||  ||| | ||||||||| ||||| ||||||||||    
T  13070459 tgaaacttctgtaacaaagcagctgcgaccatcttcatttgaa 13070417  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 13129671 - 13129779
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||||||||||  ||| | ||||||||| ||||| |    
T  13129671 ccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatct 13129770  T
Q  183 tcatttgaa 191  Q
    |||||||||    
T  13129771 tcatttgaa 13129779  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 13161364 - 13161472
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    ||||||| |||||| ||||  | |||||  ||||| ||||||   ||||||||||| || |||||||||||||||| ||| | ||||||||| ||||| |    
T  13161364 ccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13161463  T
Q  183 tcatttgaa 191  Q
    |||||||||    
T  13161464 tcatttgaa 13161472  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 13100812 - 13100987
Alignment:
Q  51 aaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtg 150  Q
    |||| |||||| || | |||||||| || || ||||||| |||| | ||||||| |||||   | || |||| ||  ||||||||||| || ||||||||    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  151 aaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggt 226  Q
    |||||||  ||| | ||||||||| ||||| ||||||||||  | ||||||||| || || | |||||||| ||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggt 13100987  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 13010616 - 13010720
Alignment:
Q  83 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtgaaacttccataatatagcagctgcaaccattt 182  Q
    |||||||  ||||| |||| |||||||| | |||| ||||  | |||||||||||| ||||||||| |||| |||||||| | | ||||||| ||||| |    
T  13010616 ccatgttttatgcgaagaataatagaaagttttggggttatggcatgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatct 13010715  T
Q  183 tcatt 187  Q
    |||||    
T  13010716 tcatt 13010720  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 13065600 - 13065424
Alignment:
Q  45 tatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttg 144  Q
    |||||||||| |||||| || | ||| |||| || || ||||||| ||| | |||   ||||||||  ||||||||||||| |||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  145 tatgtgaaacttccataatatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttc 221  Q
    ||||  ||||||||||| |||||| || ||| |||| ||||||| ||| | | | |||||||| || | ||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttc 13065424  T

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