View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807_high_7 (Length: 227)

Name: NF1807_high_7
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807_high_7
NF1807_high_7
[»] chr1 (1 HSPs)
chr1 (7-227)||(1717127-1717347)
[»] chr3 (17 HSPs)
chr3 (7-227)||(19848900-19849126)
chr3 (7-227)||(20036585-20036811)
chr3 (80-227)||(26646990-26647137)
chr3 (104-227)||(19812290-19812413)
chr3 (80-227)||(19956070-19956220)
chr3 (114-227)||(19853532-19853648)
chr3 (93-227)||(19818556-19818690)
chr3 (89-227)||(20046118-20046256)
chr3 (41-227)||(26653099-26653285)
chr3 (110-215)||(30914659-30914764)
chr3 (85-216)||(19858063-19858197)
chr3 (7-182)||(19951037-19951212)
chr3 (94-227)||(20016183-20016319)
chr3 (92-161)||(19989520-19989589)
chr3 (94-181)||(19943720-19943805)
chr3 (94-224)||(24839959-24840092)
chr3 (80-177)||(19838379-19838476)
[»] chr8 (4 HSPs)
chr8 (114-227)||(22685665-22685778)
chr8 (80-181)||(22652119-22652220)
chr8 (94-183)||(22689684-22689773)
chr8 (114-227)||(11564116-11564232)
[»] chr5 (2 HSPs)
chr5 (93-227)||(9815036-9815170)
chr5 (72-227)||(26354909-26355067)
[»] chr4 (2 HSPs)
chr4 (91-224)||(6398258-6398391)
chr4 (89-183)||(6397767-6397861)
[»] chr7 (3 HSPs)
chr7 (126-227)||(12581424-12581525)
chr7 (126-181)||(12497241-12497296)
chr7 (126-181)||(12521106-12521161)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 1717127 - 1717347
Alignment:
Q  7 caagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgttt 106  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717127 caagaaatgaaagagattgaagataaattgatccttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgttt 1717226  T
Q  107 ttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717227 ttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtt 1717326  T
Q  207 tcctattgctgttcatcttgc 227  Q
    |||||||||||||||||||||    
T  1717327 tcctattgctgttcatcttgc 1717347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 19848900 - 19849126
Alignment:
Q  7 caagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaaggaggtaggcctagaacaacattatggatggatg 103  Q
    ||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||||||  | |||| ||| |||  |||||||||     
T  19848900 caagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggata 19848999  T
Q  104 tttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagc---tttggtgaaaaaatc 200  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||     |||||||||||  ||    
T  19849000 ttttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttc 19849099  T
Q  201 tttgtttcctattgctgttcatcttgc 227  Q
    ||||||||||||||||||  |||||||    
T  19849100 tttgtttcctattgctgtatatcttgc 19849126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 20036811 - 20036585
Alignment:
Q  7 caagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaaggaggtaggcctagaacaacattatggatggatg 103  Q
    ||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||||||  | |||| ||| |||  |||||||||     
T  20036811 caagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggata 20036712  T
Q  104 tttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagc---tttggtgaaaaaatc 200  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||     |||||||||||  ||    
T  20036711 ttttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttc 20036612  T
Q  201 tttgtttcctattgctgttcatcttgc 227  Q
    ||||||||||||||||||  |||||||    
T  20036611 tttgtttcctattgctgtatatcttgc 20036585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 26646990 - 26647137
Alignment:
Q  80 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctca 179  Q
    |||||||| |||||||||| |||  |||  | |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  26646990 ctagaacaccattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctca 26647089  T
Q  180 taaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    |  |  |||||||||||  | |||||||||||||||||||||||||||    
T  26647090 tctaaatttggtgaaaagttgtttgtttcctattgctgttcatcttgc 26647137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 19812290 - 19812413
Alignment:
Q  104 tttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatcttt 203  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||  |||||||||||| |||||    
T  19812290 ttttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaatatttggtgaaaaagtcttt 19812389  T
Q  204 gtttcctattgctgttcatcttgc 227  Q
    |||||| || ||| ||| ||||||    
T  19812390 gtttccgatcgctattcttcttgc 19812413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 19956070 - 19956220
Alignment:
Q  80 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctca 179  Q
    |||||||| || ||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||    
T  19956070 ctagaacatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctca 19956169  T
Q  180 taaa---gctttggtgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||    |||  |||||||  | |||||||||||||| ||||||||||||    
T  19956170 taaatattcttccgtgaaaagttatttgtttcctattgttgttcatcttgc 19956220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 19853532 - 19853648
Alignment:
Q  114 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata-aagctt--tggtgaaaaaatctttgtttcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| |  |||  | ||||||| |||||||||||||    
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct 19853631  T
Q  211 attgctgttcatcttgc 227  Q
    |||||| ||| ||||||    
T  19853632 attgctattcgtcttgc 19853648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 19818556 - 19818690
Alignment:
Q  93 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtg 192  Q
    |||||||||  ||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||||| ||  ||| |||||||||||||||   |||||||    
T  19818556 atggatggaaatttttattggtaaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataagaatttggtg 19818655  T
Q  193 aaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||| | | |||||||| |||||||| |||||||    
T  19818656 aaaaattatctgtttcctgttgctgttaatcttgc 19818690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 20046118 - 20046256
Alignment:
Q  89 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagcttt 188  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||| ||||| || ||| |||||||||||||  ||| ||||||||||||||||  | |    
T  20046118 cattatggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaaatat 20046217  T
Q  189 ggtgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||||||| | ||||||| |||||||| || |||||||    
T  20046218 ggtgaaaaattgtttgttttctattgctattaatcttgc 20046256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 26653099 - 26653285
Alignment:
Q  41 ttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagc 140  Q
    |||||||| |||||||| |||| ||||| ||||||  | |||  ||| ||  ||| |||||| ||||  ||||  |||||||||||||||||||||| ||    
T  26653099 ttgcaagaaaacaacttaatagcaaacacggaggtgtggctaacacaccaacatgaatggatattttcattgactaaggtagtgaaattgaacatgatgc 26653198  T
Q  141 atttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||| |||||  ||||||||||  ||| |||||||||||||| ||  || |||||||  ||||||||| |||||||||||||||||||    
T  26653199 attccttgcagcttggttgtcaatttttgtttttcctcatatagaattagtgaaaagttctttgttttctattgctgttcatcttgc 26653285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 30914659 - 30914764
Alignment:
Q  110 ttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcc 209  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||  ||| |||||| ||||| |||| |||||||||||  | |||||||||    
T  30914659 ttgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaagatttggtgaaaagttttttgtttcc 30914758  T
Q  210 tattgc 215  Q
    ||||||    
T  30914759 tattgc 30914764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 19858063 - 19858197
Alignment:
Q  85 acaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata-aa 183  Q
    |||||| | ||||||||| ||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||| ||| |     
T  19858063 acaacagtgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagat 19858162  T
Q  184 gcttt--ggtgaaaaaatctttgtttcctattgct 216  Q
     ||||   ||||||| |||||||||||||||||||    
T  19858163 actttaatgtgaaaagatctttgtttcctattgct 19858197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 19951037 - 19951212
Alignment:
Q  7 caagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgttt 106  Q
    ||||||||||||||| ||||||||||  | ||| |||||||| |   ||||| || ||   ||  ||||| | ||||| ||||||||||||||||| |||    
T  19951037 caagaaatgaaagaggttgaagaaaagctcatcattgcaagacagacactttctaagactaaaacaggtatggctagagcaacattatggatggatattt 19951136  T
Q  107 ttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataa 182  Q
    |   |||||||||||||||||||||||||||||| || |||| ||||||||||||  ||| |||||||||| ||||    
T  19951137 tcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataa 19951212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 20016319 - 20016183
Alignment:
Q  94 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa---gctttgg 190  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| |||||||||    |||  |    
T  20016319 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 20016220  T
Q  191 tgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||||  | ||||||||| |||||| ||||||||||    
T  20016219 tgaaaagttgtttgtttccgattgctattcatcttgc 20016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 19989520 - 19989589
Alignment:
Q  92 tatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 161  Q
    ||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  19989520 tatggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtc 19989589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 19943720 - 19943805
Alignment:
Q  94 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 181  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||    
T  19943720 tggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatt--tgtttttcctcata 19943805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 24840092 - 24839959
Alignment:
Q  94 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa---gctttgg 190  Q
    ||||||||| ||||  | ||||||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||| |||||||||    || | |    
T  24840092 tggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaatactctctag 24839993  T
Q  191 tgaaaaaatctttgtttcctattgctgttcatct 224  Q
    |||||   |||||||||||| |||||||||||||    
T  24839992 tgaaatgttctttgtttcctgttgctgttcatct 24839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 19838379 - 19838476
Alignment:
Q  80 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcct 177  Q
    |||||||| || ||||||||||| ||||  | ||||||||||| ||||||||||||||||| ||||| ||||||||||||||  ||| ||||||||||    
T  19838379 ctagaacatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcct 19838476  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 22685778 - 22685665
Alignment:
Q  114 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctatt 213  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||  ||| ||||||||||||||||  |||||||||||  ||| ||||||| |||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaaacttctatgtttccgatt 22685679  T
Q  214 gctgttcatcttgc 227  Q
    ||| ||||||||||    
T  22685678 gctattcatcttgc 22685665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 22652220 - 22652119
Alignment:
Q  80 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctca 179  Q
    ||||| ||||||||||||||||| ||||  | ||||||||||||||||||||||||||||| || |||||||||||||||||  ||| ||||||| ||||    
T  22652220 ctagagcaacattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctca 22652121  T
Q  180 ta 181  Q
    ||    
T  22652120 ta 22652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 22689773 - 22689684
Alignment:
Q  94 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 183  Q
    ||||||||||||||  | ||||| |||| |||| ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  22689773 tggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 22689684  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 11564232 - 11564116
Alignment:
Q  114 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa-gctt--tggtgaaaaaatctttgtttcct 210  Q
    ||||| |||| |||||||||||||||||||  || || | ||| | ||  ||| |||||||||||||||| ||||  || | ||||  ||||||||||||    
T  11564232 taaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgttgatcaaaagttctttgtttcct 11564133  T
Q  211 attgctgttcatcttgc 227  Q
    |||||||||||||||||    
T  11564132 attgctgttcatcttgc 11564116  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 9815036 - 9815170
Alignment:
Q  93 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtg 192  Q
    |||||||||| ||||  | || ||||||||||||||||| |||||||| ||  ||||||| ||||||||  | | ||||||  |||||||| ||||||||    
T  9815036 atggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatctttggtg 9815135  T
Q  193 aaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||  ||||||||| |||||||| ||||||||||    
T  9815136 aaaagttctttgttttctattgctattcatcttgc 9815170  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 26355067 - 26354909
Alignment:
Q  72 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtt 171  Q
    ||||| ||| |||| | |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||  ||| | ||||||| ||  ||| ||||    
T  26355067 aggtaagccaagaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtt 26354968  T
Q  172 tttcct-cataaagc--tttggtgaaaaaatctttgtttcctattgctgttcatcttgc 227  Q
    ||||||  | || ||   ||||||||||  |||||||||||||||||| ||||||||||    
T  26354967 tttcctagaaaatgcatgttggtgaaaagttctttgtttcctattgctattcatcttgc 26354909  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 6398258 - 6398391
Alignment:
Q  91 ttatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttgg 190  Q
    |||||||||||| | ||| |  |||||||||||||||||||||||||||| || ||||||| ||||||||   ||| ||||||||||  |||| |  |||    
T  6398258 ttatggatggatatgtttatctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatgg 6398357  T
Q  191 tgaaaaaatctttgtttcctattgctgttcatct 224  Q
    ||||||  | ||||||| ||||||||||| ||||    
T  6398358 tgaaaagttgtttgttttctattgctgttaatct 6398391  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 6397861 - 6397767
Alignment:
Q  89 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 183  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||||||||| || |||||||| ||||||||  ||| || |||||||| ||||    
T  6397861 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaa 6397767  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 12581424 - 12581525
Alignment:
Q  126 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatctt 225  Q
    ||||||||||||||| || |||||||||||||||||  ||| ||||||||||| || |    |||||||||  | ||||||| |||||||| || |||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatggtgaaaagttatttgttttctattgctattaatctt 12581523  T
Q  226 gc 227  Q
    ||    
T  12581524 gc 12581525  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 12497241 - 12497296
Alignment:
Q  126 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 181  Q
    ||||||||||||||| || |||||||| ||||||||  ||| ||||||||||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12497296  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 12521106 - 12521161
Alignment:
Q  126 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 181  Q
    ||||||||||||||| || |||||||| ||||||||  ||| ||||||||||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12521161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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