View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1807_low_1 (Length: 598)
Name: NF1807_low_1
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1807_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 12748605 - 12749040
Alignment:
| Q |
18 |
gcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtactactgcgcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748605 |
gcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtactactgcgcttt |
12748704 |
T |
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| Q |
118 |
tgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttgctttgaactt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748705 |
tgctgtgtaagatagctttgtgtgtttaaataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttgctttgaactt |
12748804 |
T |
|
| Q |
218 |
gccatgccaatccctataaattcccttctacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctcatggcttcta |
317 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748805 |
gccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctcatggcttcta |
12748904 |
T |
|
| Q |
318 |
tacatagagttcccattgttgctttctcagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggaggtggctatgg |
417 |
Q |
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| T |
12748905 |
tacatagagttcccattgttgctttcttagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggaggtggctatgg |
12749004 |
T |
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| Q |
418 |
tttaggccatggcattgttggtggaggtcatggagg |
453 |
Q |
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| T |
12749005 |
tttaggccatggcattgttggtggaggtcatggagg |
12749040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 12811685 - 12812120
Alignment:
| Q |
18 |
gcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtactactgcgcttt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12811685 |
gcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtactactgcgcttt |
12811784 |
T |
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| Q |
118 |
tgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttgctttgaactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12811785 |
tgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttgctttgaactt |
12811884 |
T |
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| Q |
218 |
gccatgccaatccctataaattcccttctacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctcatggcttcta |
317 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12811885 |
gccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctcatggcttcta |
12811984 |
T |
|
| Q |
318 |
tacatagagttcccattgttgctttctcagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggaggtggctatgg |
417 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12811985 |
tacatagaattcccattgttgctttcttagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggaggtggctatgg |
12812084 |
T |
|
| Q |
418 |
tttaggccatggcattgttggtggaggtcatggagg |
453 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12812085 |
tttaggccatggcattgttggtggaggtcatggagg |
12812120 |
T |
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