View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1807_low_2 (Length: 251)

Name: NF1807_low_2
Description: NF1807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1807_low_2
NF1807_low_2
[»] chr1 (1 HSPs)
chr1 (1-239)||(1717422-1717660)
[»] chr3 (18 HSPs)
chr3 (1-174)||(19812488-19812661)
chr3 (11-242)||(19849211-19849442)
chr3 (2-174)||(19818766-19818938)
chr3 (5-118)||(19956299-19956412)
chr3 (1-242)||(20015873-20016108)
chr3 (1-242)||(20036275-20036510)
chr3 (5-126)||(19838608-19838729)
chr3 (11-174)||(19989743-19989900)
chr3 (29-126)||(26647240-26647337)
chr3 (1-126)||(26653360-26653485)
chr3 (1-94)||(30914854-30914947)
chr3 (54-118)||(19832133-19832197)
chr3 (1-239)||(19951332-19951564)
chr3 (64-239)||(19858343-19858512)
chr3 (69-174)||(17114992-17115091)
chr3 (63-111)||(19943987-19944035)
chr3 (63-111)||(24839774-24839822)
chr3 (202-242)||(26653554-26653594)
[»] chr5 (2 HSPs)
chr5 (1-242)||(9815245-9815480)
chr5 (6-111)||(26354724-26354829)
[»] chr8 (1 HSPs)
chr8 (54-111)||(22689473-22689530)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1717422 - 1717660
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717422 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 1717521  T
Q  101 aaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaa 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717522 aaggttcaaaagtttacaatcacaactaaaaaccacgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaa 1717621  T
Q  201 gatgttaggttgacattagactcagctattgatgatttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1717622 gatgttaggttgacattagactcagctattgatgatttt 1717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 19812488 - 19812661
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    |||| |||| |||||||||||||||||||||||| ||||||||| |   |||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  19812488 caattgttgatttgtcaaaatatcctgttggtggtgatagatttcccttggagattactcttcaatcacccttttacttggttcaaatttgggt-ttggg 19812586  T
Q  101 a-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggc 174  Q
    | |||||||||| ||| ||| |||||| | |||| ||| ||| |||||| || |||||||||| |||||||||||    
T  19812587 agaggttcaaaaatttgcaaccacaacaacaaactatgttgatcaaccatggcgacccttttttgtttaggtggc 19812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 19849211 - 19849442
Alignment:
Q  11 tttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaa 110  Q
    ||||||||||| || ||||||||| ||||||||| |   |||| ||| |||| ||||||||||||| ||||||||||||||||||| ||  |||||||||    
T  19849211 tttgtcaaaatgtcatgttggtggtgatagatttcccttggagattactcttaaatcacccttttatttggttcaaatttgggtgtgggagaggttcaaa 19849310  T
Q  111 agtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaagatgttaggt 210  Q
    | ||| ||| |||| | | |||||||| |||||||||| || || ||||| | |||||| |||| || |  | | | ||||||||||||  |||||||||    
T  19849311 aatttgcaaccacagccacaaaccatgttgaccaaccatggggatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggt 19849410  T
Q  211 tgacattagactcagctattgatgattttctt 242  Q
    || |||||||||| ||||| ||||||||||||    
T  19849411 tggcattagactcggctatggatgattttctt 19849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 19818766 - 19818938
Alignment:
Q  2 aatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggga 101  Q
    |||||||| ||||||||||||| |||||||||| ||||||||| ||   ||  ||| |||||||||||||||||| ||||||||||| ||||||| ||      
T  19818766 aatagttgatttgtcaaaatattctgttggtggtgatagatttcctttagaacttactcttcaatcacccttttatttggttcaaatatgggtgtgggag 19818865  T
Q  102 aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggc 174  Q
    |||||||||| | | ||| |||  | | |||||||| |||  ||||| ||||||||||||| |||||||||||    
T  19818866 aggttcaaaaatatgcaaccactgccacaaaccatgttgataaaccatggagacccttttttgtttaggtggc 19818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 19956299 - 19956412
Alignment:
Q  5 agttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaagg 104  Q
    ||||| |||||||||||||||||| ||||| ||||||| | ||   ||  ||| |||||||||||||||||||||||||||||||||||||| || ||||    
T  19956299 agttgatttgtcaaaatatcctgtgggtggtgatagatatccttcagaacttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaagg 19956398  T
Q  105 ttcaaaagtttaca 118  Q
    ||||||| ||||||    
T  19956399 ttcaaaaatttaca 19956412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20016108 - 20015873
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    |||| |||| |||||||||||||| ||| ||||| ||||| | | ||   || ||||  |||||||||||| |||| ||||||||||||||||||| ||     
T  20016108 caattgttgatttgtcaaaatatcatgtgggtggtgataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtggga 20016009  T
Q  101 aaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaa 200  Q
     |||||||||| ||||||| ||||||      ||||| ||| ||| || | ||||||||| | ||||||||||| || |  | | |  |||||||||||     
T  20016008 gaggttcaaaattttacaaccacaac------ccatgttgatcaatcatgaagaccctttattgtttaggtggcataaggttcaggctttgaaaattgac 20015915  T
Q  201 gatgttaggttgacattagactcagctattgatgattttctt 242  Q
     |||||| | || |||||||||||||||||||||||||||||    
T  20015914 aatgttatggtggcattagactcagctattgatgattttctt 20015873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20036510 - 20036275
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    |||| |||| ||||||||||| || ||||||||| |||||| || ||   || |||| |||| ||||||||||||||||||||||||||||||||| ||     
T  20036510 caattgttgatttgtcaaaatgtcatgttggtggtgatagacttcctttagaagttactcttgaatcacccttttacttggttcaaatttgggtgtggga 20036411  T
Q  101 aaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaa 200  Q
     |||||||||| ||||||| ||||||      ||||| ||   ||||| || |||||||||| ||||||||||| || |  |||   |||||  |||||     
T  20036410 gaggttcaaaaatttacaaccacaac------ccatgttgttgaaccatggggacccttttttgtttaggtggcataaggttaagcccttgatgattgac 20036317  T
Q  201 gatgttaggttgacattagactcagctattgatgattttctt 242  Q
     |||||||| || |||||||||| ||||| ||||| ||||||    
T  20036316 aatgttaggatggcattagactcggctatggatgactttctt 20036275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 19838608 - 19838729
Alignment:
Q  5 agttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaagg 104  Q
    ||||| |||||||||| ||||||||||| | |||| || | ||   || |||| |||||||||||||||||||||||||||||||||||||| ||  |||    
T  19838608 agttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagagg 19838707  T
Q  105 ttcaaaagtttacaatcacaac 126  Q
    ||||||| ||||||| ||||||    
T  19838708 ttcaaaaatttacaaccacaac 19838729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 19989743 - 19989900
Alignment:
Q  11 tttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggga-aggttcaa 109  Q
    ||||||||||  |||||||||||| |||||| || | | ||||| || |||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  19989743 tttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcacccttttacttggttcaagtttgggt-ttgggagaggttcaa 19989841  T
Q  110 aagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggc 174  Q
    || ||||||| ||||||      ||||| ||| |||| | | ||||||||||| |||||||||||    
T  19989842 aaatttacaaccacaac------ccatgctgatcaactatgaagacccttttttgtttaggtggc 19989900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 26647240 - 26647337
Alignment:
Q  29 tggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 126  Q
    |||||| ||||||| | ||  ||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||    
T  26647240 tggtggtgatagatatcctttggaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttcaaaaatttacaaccacaac 26647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26653360 - 26653485
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    |||| ||||||||||||||||||  ||||||||| ||||||||| ||  ||| |||| ||| | |||||||||||||||||||||||||||||||| ||     
T  26653360 caattgttggtttgtcaaaatattatgttggtggtgatagatttcctttggaagttaatctacgatcacccttttacttggttcaaatttgggtgtggga 26653459  T
Q  101 aaggttcaaaagtttacaatcacaac 126  Q
     ||||||| || ||| ||| ||||||    
T  26653460 gaggttcacaaatttgcaaccacaac 26653485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30914854 - 30914947
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggt 94  Q
    ||||||||||||||||||||||||  |||||||| ||||||| | ||| |||||||| |||||| ||||||||| ||||||| |||||||||||    
T  30914854 caatagttggtttgtcaaaatatcaagttggtggtgatagatgtcctatggaggttactcttcactcaccctttgacttggtacaaatttgggt 30914947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 19832133 - 19832197
Alignment:
Q  54 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 118  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  19832133 gttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttaca 19832197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19951332 - 19951564
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    |||| |||| |||||||||||||| ||| ||||| ||||||| | ||   ||  ||| |||||||||||||||||||||||||||||||||| | |||||    
T  19951332 caattgttgatttgtcaaaatatcatgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggttcaaatttggat-ttggg 19951430  T
Q  101 a-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattga 199  Q
    | ||||| |||| ||||||| ||||||      |||||  ||  ||||| ||||||||||||| ||||||||||| || |  |||   ||||| |||  |    
T  19951431 agaggtttaaaaatttacaaccacaac------ccatgccgataaaccatggagacccttttttgtttaggtggcataaggttaagcccttgagaatcca 19951524  T
Q  200 agatgttaggttgacattagactcagctattgatgatttt 239  Q
     |||||||||||  |||||||| ||||||| | |||||||    
T  19951525 cgatgttaggttagcattagacgcagctatgggtgatttt 19951564  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 239
Target Start/End: Original strand, 19858343 - 19858512
Alignment:
Q  64 aatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttg 163  Q
    ||||||||||||||||| ||||| ||||||| | || ||||||||||| |||| |  ||||||      ||||| ||| ||| || ||||| ||||| |     
T  19858343 aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaac------ccatgttgatcaagcatggagaacctttatt 19858436  T
Q  164 gtttaggtggcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatttt 239  Q
    ||||||||||| || |  ||| | ||||||| ||||  |||||| |||| |||||||||| |||||||||||||||    
T  19858437 gtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctattgatgatttt 19858512  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 17114992 - 17115091
Alignment:
Q  69 cccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggttta 168  Q
    |||||||||||||||||||||||| ||| ||  |||||||||| ||||||| |||      || ||||| ||| |||||| ||||||||||| | |||||    
T  17114992 cccttttacttggttcaaatttggatgtgggagaggttcaaaaatttacaaccac------aatccatgttgatcaaccatggagaccctttattgttta 17115085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 19943987 - 19944035
Alignment:
Q  63 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 111  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  19943987 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 19944035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 24839822 - 24839774
Alignment:
Q  63 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 111  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  24839822 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 24839774  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 26653554 - 26653594
Alignment:
Q  202 atgttaggttgacattagactcagctattgatgattttctt 242  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  26653554 atgtgaggttggcattagactcagcaattgatgattttctt 26653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9815245 - 9815480
Alignment:
Q  1 caatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggg 100  Q
    ||||||||  |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||||||||||||||||||||||||||||| ||     
T  9815245 caatagttaatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtggga 9815344  T
Q  101 aaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggcgtatgagtaaagacttgaaaattgaa 200  Q
     |||||| ||| ||||||  || |||      ||||| ||| ||| |||||||||||||| | ||||||||| | || |  | | | ||||||||||||     
T  9815345 gaggttccaaaatttacagccagaac------ccatgttgatcaatcacggagaccctttattgtttaggtgacataaggttcaggccttgaaaattgac 9815438  T
Q  201 gatgttaggttgacattagactcagctattgatgattttctt 242  Q
     |||||| | || |||||||||| ||||| ||||||||||||    
T  9815439 aatgttaagctggcattagactcggctatggatgattttctt 9815480  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 26354829 - 26354724
Alignment:
Q  6 gttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggt 105  Q
    |||| |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||| ||||||||||||||||||||||||| ||  ||||    
T  26354829 gttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggt 26354730  T
Q  106 tcaaaa 111  Q
    ||||||    
T  26354729 tcaaaa 26354724  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 22689530 - 22689473
Alignment:
Q  54 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 111  Q
    |||| ||| |||||||||||||||||||||||| ||||||||| ||  ||||||||||    
T  22689530 gttaatctgcaatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaa 22689473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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